Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13k23
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0127 - 6872780-6872835,6872943-6873026,6873501-6873784,687... 32 0.47
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 29 2.5
02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368... 29 2.5
07_03_0369 - 17356806-17356934,17357145-17357278,17357989-173582... 29 3.3
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 29 3.3
01_06_0230 + 27718840-27720188,27720983-27721174,27721488-277215... 29 3.3
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 29 4.4
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 28 7.6
06_03_0021 + 15520342-15520443,15522217-15522867,15522980-155231... 28 7.6
>05_02_0127 -
6872780-6872835,6872943-6873026,6873501-6873784,
6874403-6874568,6876724-6876906,6877400-6877505,
6877620-6877775,6878882-6878899
Length = 350
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = -1
Query: 429 DMFSQSSNHSLISFKNKADSQKHIVRIPLSDNTCLTTNRKVNS-VQRKN-KLNLNLITKC 256
D+ S++ H L+ ++ ++ PL D+ L+ N V R++ +L NLI +C
Sbjct: 7 DVESKAKVHPLVQGDDEIKGEQPNTDAPLGDSDSLSAASNDNKRVSREDIELVQNLIERC 66
Query: 255 NEFKMNKNTSVRQLKSESK 199
+ MN+ VR L + ++
Sbjct: 67 LQLYMNRGEVVRTLSTRAR 85
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Frame = -1
Query: 381 KADSQKHIVRIPLSDNTCLTTNR--------KVNSVQRKNKLNLNLITKCNEFKMNKNTS 226
KAD ++D CL TN ++++ KN+ + I C + + K T+
Sbjct: 3684 KADETLETSDAQVADEVCLQTNDGAHNMASGSCSTLEDKNEDSSAQIADCEDLLLRKGTT 3743
Query: 225 VRQLKSESKGHSELLTEN 172
V L +GHS L T +
Sbjct: 3744 VDDLDGCVEGHSGLSTHS 3761
>02_05_0280 +
27435166-27435254,27436348-27436437,27436764-27436866,
27437318-27437377,27437745-27439148,27439227-27439328,
27439424-27439609,27439695-27439820,27439905-27440000,
27440509-27440574
Length = 773
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -1
Query: 438 SFFDMFSQSSNHSLISFKNKADSQKHIVRIPLSDNTCLTTNRKVNSVQRKNKLNL 274
SF +SQSS++ S+++ HIV +P++ + + T R NS + + N+
Sbjct: 193 SFSSKYSQSSSNGFTSYESCNSMNPHIVAMPVNSKS-INTVRAFNSTGKLLQHNI 246
>07_03_0369 -
17356806-17356934,17357145-17357278,17357989-17358247,
17358322-17358410,17358644-17358794,17358889-17359032,
17359358-17359477,17359595-17359769,17359842-17360215
Length = 524
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Frame = -1
Query: 645 SIYTFYLNTGKSDRDTDDQGVMGGVVPK------SNNKNDKGIIVDVKEYCTTSRLTDAP 484
+ +T + N K+D + G +P NKN +GI +++K + + LTD
Sbjct: 224 AFFTEHPNFAKNDFYITGESYAGHYIPAFASRVYKGNKNSEGIHINLKGFAIGNGLTDPA 283
Query: 483 SIFRIATDHGTN---ITESFFDMFSQ 415
++ TD+ + IT+S F+ ++
Sbjct: 284 IQYKAYTDYSLDMGLITKSQFNRINK 309
>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 29.1 bits (62), Expect = 3.3
Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Frame = -1
Query: 543 KGIIVDVKEYCTTSRLTDAPSIFRIATDHGTNITE-SFFDMFSQSSNHSLISFKNK--AD 373
KG+ + ++EY + A I ++ +H N TE ++ S+ +L+ NK +
Sbjct: 1403 KGMEIKIQEYQERGNMLKAKEIELLSLEHAQNTTERGMTEVISKDQLEALVEKINKLTSS 1462
Query: 372 SQKHIVR-IPLSD----------NTCLTTNRKVNSVQRKNK-LNLNLITKCNEFKM---- 241
++ H+ R + +S + +V++++ +N+ L+LNL + E +
Sbjct: 1463 AESHLQRELAMSSSPIEKLFSLIDEVYALRHEVDTLRYENEDLHLNLESHTREMEQLKEA 1522
Query: 240 NKNTSVRQLKSESKGHSELLTENAMME 160
++N+ + + ESK SELL ME
Sbjct: 1523 SRNSDSNRRELESKS-SELLEITVSME 1548
>01_06_0230 + 27718840-27720188,27720983-27721174,27721488-27721569,
27721651-27721839,27721964-27722077,27722470-27722560,
27722632-27722789,27723401-27723826,27724355-27724727,
27725075-27725238
Length = 1045
Score = 29.1 bits (62), Expect = 3.3
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Frame = -1
Query: 537 IIVDVKEY-CTTSRLTDAPSI---FRIATDHGTNITE-SFFDMFSQSS--NHSLISFKNK 379
++ DV +Y C R+ AP I F + G + S + F +S N S +S+ N
Sbjct: 870 LLEDVWDYMCQYGRVPPAPMIMERFCLKLRQGDTVAAMSCINTFQESKIRNVSSMSWFNL 929
Query: 378 ADSQKHIVRIPLSDNTCLTTNRKVNSVQRKNKLNLNLITKCNEFKMNKNTSVRQLKSESK 199
+ ++ + N V+S + L N+I+ C EF ++ +TSV + S+ +
Sbjct: 930 LNRNGDRLKEDIIIKLLHELNNLVSSSGHSDSLYQNIISSCTEF-LSVSTSVEKASSDQQ 988
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 28.7 bits (61), Expect = 4.4
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 9/118 (7%)
Frame = -1
Query: 522 KEYCTTSRLTDAPSIFRIATDHGTNITESFFDMFSQSSNHSLISFKN-----KADSQKHI 358
K+ +T+ L S R+ D TN S M + L F+ K +K
Sbjct: 16 KKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTME-KLQLFRGDTVLLKGKKRKDT 74
Query: 357 VRIPLSDNTCLTTNRKVNSVQRKN-KLNLN---LITKCNEFKMNKNTSVRQLKSESKG 196
+ I L+D+TC ++N V RKN ++ L + +C + K K + + +G
Sbjct: 75 ICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEG 132
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 27.9 bits (59), Expect = 7.6
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 9/118 (7%)
Frame = -1
Query: 522 KEYCTTSRLTDAPSIFRIATDHGTNITESFFDMFSQSSNHSLISFKN-----KADSQKHI 358
K+Y +T+ L S R+ D TN S + + L F+ K +K
Sbjct: 17 KDY-STAILERKKSPNRLVVDEATNDDNSVVALHPDTMER-LQLFRGDTVLLKGKKRKDT 74
Query: 357 VRIPLSDNTCLTTNRKVNSVQRKN-KLNLN---LITKCNEFKMNKNTSVRQLKSESKG 196
+ I L+D TC ++N V RKN ++ L + +C + K K + + +G
Sbjct: 75 ICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHILPIDDTVEG 132
>06_03_0021 +
15520342-15520443,15522217-15522867,15522980-15523186,
15523698-15523913,15523992-15524214,15525052-15525299,
15525385-15525563,15525803-15526056,15526237-15526388
Length = 743
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 531 VDVKEYCTTSRLTDAPSIFRIATD 460
V+ KEYC+T R +D+ I+R D
Sbjct: 437 VNTKEYCSTQRTSDSSIIWRSPVD 460
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,185,122
Number of Sequences: 37544
Number of extensions: 253626
Number of successful extensions: 579
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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