Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k19
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   4.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   7.4  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   9.8  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
 Frame = -1

Query: 766 KNKVQILQ*QLINRHGSIVAT*TFSETLQMAYNSGYPGQAAYGGMPPGQ-LEIGHGPYPS 590
           +  V++L   L+N    + A   +   L   Y+  YP       +  GQ +         
Sbjct: 694 QQNVEVLPENLVNAQQQVQAVRNYYANLYTKYHGQYPNTQIQNPVGQGQDMTYSVQGVGV 753

Query: 589 IGVGGTITPQVQQW 548
           +  GG +  Q   W
Sbjct: 754 VNAGGWLGQQGNSW 767


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 428 HTNHQIASSFGK 463
           H NH++AS FG+
Sbjct: 353 HDNHRVASRFGR 364


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 652 QAAYGGMPPGQLEIGHGPYPSIGVGGTITP 563
           Q  YG   PG  ++G   Y +  +  T TP
Sbjct: 207 QNGYGRHLPGHAQMGRPSYTTATMATTSTP 236


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 732 LIDTEALLQHRHLARHYKWPTIPDIQD 652
           LI  E L +H HL  H+       +QD
Sbjct: 132 LIKQETLQRHHHLQNHHHHLQSTAVQD 158


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 403 INLDEFDKLYTYVNQWLAVFKTYDTDQSGFIDEGELS 293
           + L    +L  YV+QW  V+   +  +     EG LS
Sbjct: 217 VRLLRLSRLVRYVSQWEEVYILQNLQKKRTRAEGRLS 253


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 613 IGHGPYPSIGVGGTITPQVQQ 551
           + + P  +IG G T TPQ  Q
Sbjct: 161 VAYEPVWAIGTGKTATPQQAQ 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,309
Number of Sequences: 438
Number of extensions: 5076
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)