Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k16
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    28   1.7  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    27   2.9  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    26   5.0  
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    26   6.7  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 8   KLKKIDINFGVTPKTFSHLQHNYISTRLAMYHYSSNNIFYYVLC 139
           K K I I     P   S L++  + +R +++HYS NNI     C
Sbjct: 52  KAKLILIAANAPPLRKSELEYYAMLSRCSVHHYSGNNIDLGTAC 95


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 668 KKIHEI-HDLEEKCEXLXSQMSDLKAHL 588
           K I EI +D EE+   L SQ S LKAHL
Sbjct: 402 KFIEEIRNDYEERIHALESQNSALKAHL 429


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 492 LSYIGFTSNNYCYSKLCCFYTIRIYVS*FENWLTY 388
           L+ +G+  NN  +S L C +  + Y+  F +WL Y
Sbjct: 402 LATLGYLQNNV-FSFLNCLFEEKKYMKHFISWLNY 435


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +2

Query: 98  YHYSSNNIFYYVLCFPFM-KMHHR 166
           +HY ++ +F+Y + + F+ K+HHR
Sbjct: 149 WHYWAHRLFHYGIFYRFIHKVHHR 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,764
Number of Sequences: 5004
Number of extensions: 49111
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)