Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k16
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0399 - 23799830-23800090,23803448-23803558,23803685-23803693     38   0.007
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561...    29   3.0  
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    29   5.3  

>03_05_0399 - 23799830-23800090,23803448-23803558,23803685-23803693
          Length = 126

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = -2

Query: 740 YLIGEIFICXNXEIPLKNLEEAKAKKIHEIHDLEEKCEXLXSQMSDLKAHLYGKF 576
           + IGE+F     +     LE+ K     ++  LE++ E + SQM++LK  LYGKF
Sbjct: 63  FQIGEVFAHMPRDDVETRLEQMKEDAAKKLERLEQEKESIVSQMAELKKILYGKF 117


>12_02_1286 -
           27555143-27555191,27555290-27555511,27555911-27556162,
           27556683-27557062,27557202-27557311,27557864-27558033,
           27558236-27558444,27558528-27558617,27559125-27559264,
           27559356-27559463,27559626-27559716,27560736-27560852,
           27561497-27561767,27561892-27562193,27562400-27562469,
           27563464-27563702,27564613-27564846,27564943-27565179,
           27565276-27565734
          Length = 1249

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = -2

Query: 752 KKSPYLIGEIFICXNXEIPLKNLEEAKAKKIHEIHDLEEKCEXLXSQMSDLKAHL 588
           KK   ++  I+   +  + +KN+ E + +++ +   L+E+   L +QMS LK  L
Sbjct: 803 KKINEIVDRIYKDFSKSVGVKNIREYEERQLKDAQALQERKLSLSNQMSKLKYQL 857


>01_06_0124 -
           26692731-26697046,26698749-26698827,26698899-26698955,
           26699321-26699416
          Length = 1515

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 710 NXEIPLKNLEEAKAKKIHEIHDLEEKCEXLXSQMSDLKAHLYGK 579
           N +  ++NLE AK    +E+   +EKC  L SQ+   KA L  K
Sbjct: 548 NLQEAVENLEAAKTNMYNEVTVHQEKCTFLSSQLE--KAQLAEK 589


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,232,156
Number of Sequences: 37544
Number of extensions: 222913
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)