Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k16
         (756 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41816-1|AAB17063.1|  130|Homo sapiens C-1 protein.                    52   2e-06
BC010953-1|AAH10953.1|  134|Homo sapiens prefoldin subunit 4 pro...    52   2e-06
AL133335-1|CAI19316.1|  134|Homo sapiens prefoldin subunit 4 pro...    52   2e-06

>U41816-1|AAB17063.1|  130|Homo sapiens C-1 protein.
          Length = 130

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 26/59 (44%), Positives = 35/59 (59%)
 Frame = -2

Query: 743 PYLIGEIFICXNXEIPLKNLEEAKAKKIHEIHDLEEKCEXLXSQMSDLKAHLYGKFGSH 567
           PY IG++FI  + E   + LEEAK     EI  LE + E +   ++DLK  LY KFGS+
Sbjct: 64  PYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSN 122


>BC010953-1|AAH10953.1|  134|Homo sapiens prefoldin subunit 4
           protein.
          Length = 134

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 26/59 (44%), Positives = 35/59 (59%)
 Frame = -2

Query: 743 PYLIGEIFICXNXEIPLKNLEEAKAKKIHEIHDLEEKCEXLXSQMSDLKAHLYGKFGSH 567
           PY IG++FI  + E   + LEEAK     EI  LE + E +   ++DLK  LY KFGS+
Sbjct: 68  PYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSN 126


>AL133335-1|CAI19316.1|  134|Homo sapiens prefoldin subunit 4
           protein.
          Length = 134

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 26/59 (44%), Positives = 35/59 (59%)
 Frame = -2

Query: 743 PYLIGEIFICXNXEIPLKNLEEAKAKKIHEIHDLEEKCEXLXSQMSDLKAHLYGKFGSH 567
           PY IG++FI  + E   + LEEAK     EI  LE + E +   ++DLK  LY KFGS+
Sbjct: 68  PYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSN 126


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,067,861
Number of Sequences: 237096
Number of extensions: 1485006
Number of successful extensions: 5880
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5879
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9127122082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)