Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k16
         (756 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-951|AAF50782.1|  138|Drosophila melanogaster CG10635-PA...    53   4e-07
AY119195-1|AAM51055.1|  138|Drosophila melanogaster SD11994p pro...    52   6e-07
AY129432-1|AAM76174.1|  744|Drosophila melanogaster GM04379p pro...    32   0.73 
AY089639-1|AAL90377.1|  595|Drosophila melanogaster RE56519p pro...    32   0.73 
AE014297-2081|AAN13676.1|  744|Drosophila melanogaster CG17604-P...    32   0.73 
AE014297-2080|AAN13675.1|  744|Drosophila melanogaster CG17604-P...    32   0.73 
AE014297-2079|AAF55223.1|  744|Drosophila melanogaster CG17604-P...    32   0.73 

>AE014296-951|AAF50782.1|  138|Drosophila melanogaster CG10635-PA
           protein.
          Length = 138

 Score = 53.2 bits (122), Expect = 4e-07
 Identities = 23/59 (38%), Positives = 38/59 (64%)
 Frame = -2

Query: 743 PYLIGEIFICXNXEIPLKNLEEAKAKKIHEIHDLEEKCEXLXSQMSDLKAHLYGKFGSH 567
           P+L+GE+F+    E     L+E K + + EI  +E K + + ++M +LKAHLY +FGS+
Sbjct: 73  PFLVGEVFLSHKLEKTQDMLKETKEQVLKEIAGVEAKAKVIKAEMDELKAHLYQRFGSN 131


>AY119195-1|AAM51055.1|  138|Drosophila melanogaster SD11994p
           protein.
          Length = 138

 Score = 52.4 bits (120), Expect = 6e-07
 Identities = 23/59 (38%), Positives = 38/59 (64%)
 Frame = -2

Query: 743 PYLIGEIFICXNXEIPLKNLEEAKAKKIHEIHDLEEKCEXLXSQMSDLKAHLYGKFGSH 567
           P+L+GE+F+    E     L+E K + + EI  +E K + + ++M +LKAHLY +FGS+
Sbjct: 73  PFLVGEVFLSHKLEKTQDMLKETKEQVLKEIAVVEAKAKVIKAEMDELKAHLYQRFGSN 131


>AY129432-1|AAM76174.1|  744|Drosophila melanogaster GM04379p
           protein.
          Length = 744

 Score = 32.3 bits (70), Expect = 0.73
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 716 CXNXEIPLKNLEEAKAKKIHEIHDLEEKCEXLXSQMSDLKA 594
           C N +  L+  E AK+  +HE+ DL+E  E L  Q  D+ A
Sbjct: 259 CENYKKDLEEAEVAKSMILHELTDLKELHEDLQLQFEDVSA 299


>AY089639-1|AAL90377.1|  595|Drosophila melanogaster RE56519p
           protein.
          Length = 595

 Score = 32.3 bits (70), Expect = 0.73
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 716 CXNXEIPLKNLEEAKAKKIHEIHDLEEKCEXLXSQMSDLKA 594
           C N +  L+  E AK+  +HE+ DL+E  E L  Q  D+ A
Sbjct: 110 CENYKKDLEEAEVAKSMILHELTDLKELHEDLQLQFEDVSA 150


>AE014297-2081|AAN13676.1|  744|Drosophila melanogaster CG17604-PC,
           isoform C protein.
          Length = 744

 Score = 32.3 bits (70), Expect = 0.73
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 716 CXNXEIPLKNLEEAKAKKIHEIHDLEEKCEXLXSQMSDLKA 594
           C N +  L+  E AK+  +HE+ DL+E  E L  Q  D+ A
Sbjct: 259 CENYKKDLEEAEVAKSMILHELTDLKELHEDLQLQFEDVSA 299


>AE014297-2080|AAN13675.1|  744|Drosophila melanogaster CG17604-PB,
           isoform B protein.
          Length = 744

 Score = 32.3 bits (70), Expect = 0.73
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 716 CXNXEIPLKNLEEAKAKKIHEIHDLEEKCEXLXSQMSDLKA 594
           C N +  L+  E AK+  +HE+ DL+E  E L  Q  D+ A
Sbjct: 259 CENYKKDLEEAEVAKSMILHELTDLKELHEDLQLQFEDVSA 299


>AE014297-2079|AAF55223.1|  744|Drosophila melanogaster CG17604-PA,
           isoform A protein.
          Length = 744

 Score = 32.3 bits (70), Expect = 0.73
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 716 CXNXEIPLKNLEEAKAKKIHEIHDLEEKCEXLXSQMSDLKA 594
           C N +  L+  E AK+  +HE+ DL+E  E L  Q  D+ A
Sbjct: 259 CENYKKDLEEAEVAKSMILHELTDLKELHEDLQLQFEDVSA 299


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,765,103
Number of Sequences: 53049
Number of extensions: 441794
Number of successful extensions: 824
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3458330568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)