Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k15
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...   155   6e-39
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    30   0.48 
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   3.4  
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    27   3.4  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.5  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.0  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   6.0  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   7.9  

>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 513

 Score =  155 bits (377), Expect = 6e-39
 Identities = 88/258 (34%), Positives = 142/258 (55%), Gaps = 6/258 (2%)
 Frame = -2

Query: 851  PPLYVEISYYGAGEKTRP---IVLIGKGVTFDSGSLDLKSPKDLRYMKGDMAGAGCILAI 681
            PP ++E+ Y G  EK++    + L+GKGVTFDSG + +K  ++++ M+ DM GA  +L+ 
Sbjct: 255  PPRFLEVQYIGK-EKSKDDGWLGLVGKGVTFDSGGISIKPSQNMKEMRADMGGAAVMLSS 313

Query: 680  TRTAARLKLPINIRGILPLCELMPNGNSPKFGDVAYSANGKSLHIRLPSREGRLLIADSL 501
                 +L +P+N   + PL E +P+G++ K GDV +  NG S+ I     EGRL++AD++
Sbjct: 314  IYALEQLSIPVNAVFVTPLTENLPSGSAAKPGDVIFMRNGLSVEIDNTDAEGRLILADAV 373

Query: 500  VY-ARNYWPKLIIDIGTMSKELIYTLDGSACGCYTNSDELFCYLQSASSQTGDRIWRMPL 324
             Y +  Y  K +I+  T++  ++  L     G +   +EL+  L++AS   GD  WRMP 
Sbjct: 374  HYVSSQYKTKAVIEASTLTGAMLVALGNVFTGAFVQGEELWKNLETASHDAGDLFWRMPF 433

Query: 323  WKFYEDRVRDCHTADVANTGRDEFGDSPNCAAFLKQFIC--DTKWVHLDTYNIAYSKGRD 150
             + Y  ++     AD+ N  R   G     AAF+K F+   D  + HLD   +   +   
Sbjct: 434  HEAYLKQLTSSSNADLCNVSR-AGGGCCTAAAFIKCFLAQKDLSFAHLDIAGVMDKQLNS 492

Query: 149  FPYLRRGMTGRPTRTILE 96
            +     GM+GRP RTI+E
Sbjct: 493  WDC--DGMSGRPVRTIIE 508


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -2

Query: 632 LPLCELMPNGNSPKFGDVAYSANGKSLHIRLPSREGRLLIADS 504
           LPL +L+P  N     D+++S+NG  ++I    ++G +LI D+
Sbjct: 219 LPLYKLLPKENHSGVTDISWSSNG--MYIAASFKKGGILIWDT 259


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 84  LKYEFENGSCWTTGHAAAKIWEIASFG 164
           L+Y   + SCWTTG     I+E+ S G
Sbjct: 396 LQYGNADCSCWTTGCGEFDIFEVLSTG 422


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 437 IYTLDGSACGCYTNSDELFCYLQSASSQTGDRIWRMP 327
           I TL  S    Y  S     Y+  A ++TGD+IW++P
Sbjct: 239 IRTLSFSYDSRYLASGSEDRYVDIADTKTGDQIWKIP 275


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 488 NYWPKLIIDIGTMSKELIYTLDGSACGCYTNSD 390
           N  P   + +GT+ + L Y L+G+   CYT +D
Sbjct: 93  NDLPAFFVQLGTVRRLLEYNLEGA---CYTQND 122


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 505 LSAMRSRPSRDGNLMCKDF--PLALYATSPNLG 597
           L  M   P RDGNL   +F  P + +ATS N+G
Sbjct: 34  LDGMSIMPQRDGNLQIPNFVKPKSTFATS-NIG 65


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 508 SAMRSRPSRDGNLMCKDFPLALYATSPNLGLFPFGINSHN 627
           SA  S PS +G  +  D P    +T+PNL      ++S N
Sbjct: 608 SAASSTPSYNGERIVPDVPSPCISTNPNLPALVGSLDSVN 647


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
 Frame = -3

Query: 418 VLAVVTPIAMNCFATFNQRVVRPVIGF-------GECHYGNFTKIE 302
           +L  V  + ++ F T   R+VRP++ F       G    GNFTK+E
Sbjct: 252 ILLSVAHVFLDAFTTKILRIVRPILLFPLAGKFLGRFIPGNFTKLE 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,751,153
Number of Sequences: 5004
Number of extensions: 82756
Number of successful extensions: 225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)