Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13k15
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1055 - 33798162-33798290,33798417-33798604,33798707-337987... 146 2e-35
12_02_0137 + 14153603-14153629,14154136-14154586,14155066-141552... 114 7e-26
06_03_1219 - 28491185-28494415 30 2.1
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 29 4.7
02_04_0572 + 23972319-23973683 29 4.7
02_02_0032 - 6227556-6227926,6228322-6231085 29 4.7
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 29 6.3
06_03_1220 - 28505306-28508497 29 6.3
06_03_1217 - 28484007-28487237 29 6.3
04_02_0006 + 8455219-8457469,8457560-8457924 29 6.3
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484... 29 6.3
02_02_0034 - 6246183-6246553,6246672-6249699 29 6.3
02_01_0168 + 1162447-1162866,1162940-1163317,1163606-1163829,116... 29 6.3
01_06_0224 - 27672201-27672336,27672439-27672507,27672948-276730... 29 6.3
>02_05_1055 - 33798162-33798290,33798417-33798604,33798707-33798767,
33799045-33799122,33799250-33799472,33799599-33799824,
33799922-33800116,33800210-33800627,33800904-33801182
Length = 598
Score = 146 bits (354), Expect = 2e-35
Identities = 84/261 (32%), Positives = 142/261 (54%), Gaps = 5/261 (1%)
Frame = -2
Query: 851 PPLYVEISYYG-AGEKTRPIVLIGKGVTFDSGSLDLKSPK--DLRYMKGDMAGAGCILAI 681
PP ++ + Y G R + ++GKG+TFDSG ++K+ + MK DM G+ +
Sbjct: 343 PPHFIHLCYKPPGGNAKRKLAIVGKGLTFDSGGYNIKTGPGCSIELMKFDMGGSAAVFGA 402
Query: 680 TRTAARLKLP-INIRGILPLCELMPNGNSPKFGDVAYSANGKSLHIRLPSREGRLLIADS 504
+ ++K P + + I+ CE M +G + GD+ ++NGK++ + EGRL +AD+
Sbjct: 403 AKALGQIKPPGVEVHFIVAACENMISGTGMRPGDIVTASNGKTIEVNNTDAEGRLTLADA 462
Query: 503 LVYARNYWPKLIIDIGTMSKELIYTLDGSACGCYTNSDELFCYLQSASSQTGDRIWRMPL 324
LVYA N IID+ T++ + L S G +T SDEL + +AS +G++ WRMPL
Sbjct: 463 LVYACNQGVDKIIDLATLTGACVVALGPSIAGIFTPSDELAKEVAAASEISGEKFWRMPL 522
Query: 323 WKFYEDRVRDCHTADVANTGRDEFGDSPNCAAFLKQFICD-TKWVHLDTYNIAYSKGRDF 147
+ Y + ++ AD+ NTG + G S A FLKQF+ + +W+H+D ++
Sbjct: 523 EESYWESMKS-GVADMVNTGGRQ-GGSITAALFLKQFVDEKVQWMHIDMAGPVWND---- 576
Query: 146 PYLRRGMTGRPTRTILEFIFQ 84
+R TG T++E++ +
Sbjct: 577 --KKRAATGFGVSTLVEWVLK 595
>12_02_0137 + 14153603-14153629,14154136-14154586,14155066-14155260,
14155366-14155628,14155964-14156104,14156188-14156283,
14156672-14156749,14157134-14157194,14157324-14157511,
14158441-14158569
Length = 542
Score = 114 bits (275), Expect = 7e-26
Identities = 80/276 (28%), Positives = 135/276 (48%), Gaps = 22/276 (7%)
Frame = -2
Query: 851 PPLYVEISYYGAGEKT-RPIVLIGKGVTFDS-----------------GSLDLK--SPKD 732
PP ++ + Y G R + ++GKG+TFD G ++K +
Sbjct: 270 PPHFIHLCYKPPGGNVKRKLAIVGKGLTFDRFYLSLDNLLIVTKFVCIGGYNIKIGAVTT 329
Query: 731 LRYMKGDMAGAGCILAITRTAARLKLP-INIRGILPLCELMPNGNSPKFGDVAYSANGKS 555
+ MK DM G+ + + ++K P + + I CE M +G + GD+ ++NGK+
Sbjct: 330 IELMKKDMGGSAALFGAAKALGQIKPPGVEVHFISAACENMISGTGMRPGDIVTASNGKT 389
Query: 554 LHIRLPSREGRLLIADSLVYARNYWPKLIIDIGTMSKELIYTLDGSACGCYTNSDELFCY 375
+ + EGRL +AD+LVYA IID+ T++ L S G T SDEL
Sbjct: 390 IEVDNTDAEGRLTLADALVYACKLGVDKIIDLATLTGYCRIALGPSIAGILTPSDELDKE 449
Query: 374 LQSASSQTGDRIWRMPLWKFYEDRVRDCHTADVANTGRDEFGDSPNCAAFLKQFICD-TK 198
+ +A +G++ WR+PL + Y ++++ AD+ NTG G + FLKQF+ + K
Sbjct: 450 VAAAYEASGEKFWRLPLEESYWEQMKS-SVADMLNTG-SPLGGAITAGLFLKQFVDEKVK 507
Query: 197 WVHLDTYNIAYSKGRDFPYLRRGMTGRPTRTILEFI 90
W+H+D G + Y ++ TG T++E++
Sbjct: 508 WMHVD------MAGPVWNYKKQEATGFGVSTLVEWV 537
>06_03_1219 - 28491185-28494415
Length = 1076
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 541 NLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMANMHPAPAMSP 717
NL+ FP A++ +P L NS G +P + + +LA + + NM A+SP
Sbjct: 162 NLLAGQFPSAIWEHTPRLVSLNASNNSFRGTIPSLCVSCPALAVLDLSVNMLTG-AISP 219
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 529 SRDGNLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVM 684
S +GN + P L+ +P+L FG NS +G +P + SLS +L M
Sbjct: 186 SLEGNSLSGQIPSFLFNNTPSLRYLSFGNNSLSGPIPD-GVASLSQLEILDM 236
>02_04_0572 + 23972319-23973683
Length = 454
Score = 29.1 bits (62), Expect = 4.7
Identities = 25/76 (32%), Positives = 39/76 (51%)
Frame = +1
Query: 436 ISSFDIVPISIISFGQ*LRAYTKLSAMRSRPSRDGNLMCKDFPLALYATSPNLGLFPFGI 615
+SS D+ ++IIS G+ RA LS++R + N + K P + PNL G+
Sbjct: 194 LSSLDL-SVNIIS-GEIPRALYNLSSLRML-FLEMNFLGKSLPSNIGYALPNLQWLLLGV 250
Query: 616 NSHNGRMPRILIGSLS 663
N G +P L G++S
Sbjct: 251 NMFQGNIPGSL-GNIS 265
>02_02_0032 - 6227556-6227926,6228322-6231085
Length = 1044
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 541 NLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMAN 690
N + D P L +SP+ G+N G +P L S SL + +M N
Sbjct: 208 NALTGDIP-PLLGSSPSFIYVDLGVNQLTGGIPEFLANSSSLQVIRLMQN 256
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +1
Query: 634 MPRILIGSLSLAAVLVMANMHPAPAMSPFI*RRSFGDLRSKLPLSKVTPLPISTIGRVFS 813
M RI++ A V+V A M P M P + S P PLP + V +
Sbjct: 1 MARIVLVVAFAAVVVVQAAMAQRPGMPPAVVPPSLPTTTPPAPTVVAPPLPTTPPPAVVA 60
Query: 814 PAP 822
P+P
Sbjct: 61 PSP 63
>06_03_1220 - 28505306-28508497
Length = 1063
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 541 NLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMANM 693
NL+ FP A++ +P L NS +G +P + + +LA + + N+
Sbjct: 158 NLLAGQFPSAIWEHTPRLVSLNASNNSFHGTIPSLCVSCPALAVLDLSVNV 208
>06_03_1217 - 28484007-28487237
Length = 1076
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 541 NLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMANM 693
NL+ FP A++ +P L NS +G +P + + +LA + + N+
Sbjct: 166 NLLAGQFPSAIWEHTPRLVSLNASNNSFHGSIPSLCVSCPALAVLDLSVNV 216
>04_02_0006 + 8455219-8457469,8457560-8457924
Length = 871
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 529 SRDGNLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMANM 693
S +GN + P ++ S N F FG N +GR+P L ++L + + +NM
Sbjct: 179 SMEGNNLNGSLPKSVGNLSTNFEWFKFGGNQISGRIPDELGNLVNLTLLDINSNM 233
>03_03_0168 -
15047383-15047847,15048085-15048192,15048313-15048464,
15048555-15048752,15049553-15050856,15051281-15051354,
15051458-15051492,15052853-15053015
Length = 832
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = -2
Query: 821 GAGEKTRPIVLIGKGVTFDSGSLDL----KSPKDLRYMKGDMAGAGCILAITRTAARLKL 654
G + +P IG+ V FDSG++ L K P D + G G +A + + RL
Sbjct: 10 GTWGRAKPYRGIGRAVAFDSGAISLLSRRKKPDDRSSIDGAEVEGGARVA-SEDSRRLGF 68
Query: 653 PINIRGILP 627
+++G P
Sbjct: 69 GASVKGRAP 77
>02_02_0034 - 6246183-6246553,6246672-6249699
Length = 1132
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 541 NLMCKDFPLALYATSPNLGLFPFGINSHNGRMPRILIGSLSLAAVLVMAN 690
N + D P L +SP+ G N GR+P L S SL + +M N
Sbjct: 208 NALTGDIP-PLLGSSPSFVYVDLGGNQLTGRIPEFLANSSSLQVLRLMQN 256
>02_01_0168 +
1162447-1162866,1162940-1163317,1163606-1163829,
1163929-1163992,1164521-1164717,1164849-1165062
Length = 498
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = -2
Query: 479 PKLIIDIGTMSKELIYTLDGSACGCYTNSDELFCYLQSASSQTGDRIWR-MPLWKFYEDR 303
PK++ + M +DG+ C + D+L + + +W W F+ D
Sbjct: 355 PKILPCLQAMEPTYTVVVDGTECAYFDQVDQLKDFGAENKESIAELLWAFFHYWAFHHDY 414
Query: 302 VRDCHTADVANT 267
D + + NT
Sbjct: 415 RNDVISVRMGNT 426
>01_06_0224 -
27672201-27672336,27672439-27672507,27672948-27673040,
27673245-27673336,27673491-27673577,27673734-27673832,
27673927-27674026,27674113-27674171,27674361-27674720
Length = 364
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 569 ANGKSLHIRLPSREGRLLIADSLVYARNYWPKLII-DIGTMSKELIYTLDG 420
A G ++ + + RLLI +LV N W ++++ D G M ELI L G
Sbjct: 289 AGGTGETVKSAAAQPRLLIPVALVMMYNRWNEILVPDYGFMHLELIPMLVG 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,943,680
Number of Sequences: 37544
Number of extensions: 535761
Number of successful extensions: 1146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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