Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k13
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    27   1.7  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   2.3  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    26   3.9  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    26   5.2  
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    26   5.2  
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    26   5.2  
SPBC30D10.04 |swi3||replication fork protection complex subunit ...    25   6.9  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   6.9  
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    25   6.9  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    25   9.1  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   9.1  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   9.1  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   9.1  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   9.1  

>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +3

Query: 72  QSQSLCDFITANVID*GPEPFDFLSTVQIW---LKLEXRRSAPGDXI 203
           +S  L D  T N+    P  FD+LS +Q W         RSAPG+ +
Sbjct: 425 ESLKLLDSATKNIKI--PSRFDWLSQIQTWKERFPFTFTRSAPGELV 469


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -1

Query: 347 RAETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEE 207
           +A +   ++D + K+ERE+     + +D   +R  A     T+H+ +
Sbjct: 508 KASSAQEAIDKKEKMEREMKNKNLELADMILERDRARHELETMHRSQ 554


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 227 WSYYPLPSDLFGNPNY 274
           +S+Y LPS + GNP Y
Sbjct: 341 FSFYSLPSTVIGNPKY 356


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -1

Query: 317 DEAKIERELAEMYKDN----SDYQTDRSEADSSSTTVHKE 210
           +E K +R LAE Y++     S+  T +SEAD      H+E
Sbjct: 401 NENKSQRSLAEEYEEEFLKKSNADTYKSEADKKKEKEHEE 440


>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 599 RLIHFLVLLTIHLAVAKNNNVKTLTESLGREII 501
           R+   L L+TI    A   NVK+++E L  EII
Sbjct: 145 RVNQALALITIGAREAAFRNVKSISECLAEEII 177


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 599 RLIHFLVLLTIHLAVAKNNNVKTLTESLGREII 501
           R+   L L+TI    A   NVK+++E L  EII
Sbjct: 145 RVNQALALITIGAREAAFRNVKSISECLAEEII 177


>SPBC30D10.04 |swi3||replication fork protection complex subunit
           Swi3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 554 AKNNNVKTLTESLGREIIEIDNPIKELPPGLEEEPSA 444
           A ++ V+ L E   RE ++ +   KE   GLEE P +
Sbjct: 5   ASDSGVEKLVEENKREEVKKNEEEKEFDLGLEENPDS 41


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 119 SVDDISCDKVTQRLGLTEPPVCGHLVGTENGGS 21
           S++    DK    LG++EP V  +L+    G S
Sbjct: 2   SLEQYVSDKAISLLGMSEPSVVEYLIAEAKGSS 34


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 287 EMYKDNSDYQTDRSEADSSSTTVHKEEGNXIARSRASGFKFQ 162
           E   +NSDY +D     SS +    +  + I+RS + G   Q
Sbjct: 245 EKCSENSDYSSDSGSYSSSYSRHLDDRASYISRSSSGGSNAQ 286


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 551 KNNNVKTLTESLGREIIEIDNPIKEL 474
           +N N++ +  ++G E++E  + IKEL
Sbjct: 145 ENENLQDMLRNVGNELVESRDEIKEL 170


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -1

Query: 344 AETTNSSVDDEA--KIERELAEMYKDNSDYQTDRSEADSSSTTVHKEE 207
           + ++ S  ++EA  KIE +       +S+  +  SE++SSS+   +EE
Sbjct: 141 SSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEE 188


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 135 DFLSTVQIWLKLEXRRSAPG 194
           D+L++++  + L+ RRSAPG
Sbjct: 447 DWLNSIRAQINLDVRRSAPG 466


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = -1

Query: 344 AETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNXIARSRASG 174
           A   +S  DDE     E  E  + N   ++ + E  S S  V   +GN + +    G
Sbjct: 352 ANDESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSDNVVLSDGNSVKKMNEDG 408


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 341 ETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTT 222
           E+  + ++ + KIE E  E+ +D+ + + +  E   +STT
Sbjct: 196 ESQGTEINLKQKIEEENDEILEDSKESKDENEENKETSTT 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,543
Number of Sequences: 5004
Number of extensions: 48260
Number of successful extensions: 180
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)