Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13k13
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 31 1.0
06_03_1236 - 28597863-28598375,28598745-28598890,28599014-285992... 29 2.3
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 3.1
11_05_0075 + 18856659-18856878,18856890-18857107,18858253-188583... 29 4.1
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971... 29 4.1
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 29 4.1
01_06_1296 + 36088467-36088582,36088697-36088819,36088938-36089607 29 4.1
11_06_0348 - 22561589-22563656,22563788-22564602 28 5.4
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849 27 9.4
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 27 9.4
02_05_0891 - 32554355-32555305 27 9.4
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 488 GCRFQLSPVPGSPSAS*HCCSSRRPNGSLGEQENELDAFRLNV 616
G + P P +PS CC+ R N +G + N + + NV
Sbjct: 46 GASLRRQPQPQAPSVRTICCNDREANAPVGYKGNSVSTTKYNV 88
>06_03_1236 -
28597863-28598375,28598745-28598890,28599014-28599247,
28599421-28599688
Length = 386
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Frame = -1
Query: 587 FLVLLTIHLA--------VAKNNNVKTLTESLGREIIEIDNPIKELPPGLEE 456
F VL+ +HL A N++ T SLG I + N IKE PPG+ E
Sbjct: 10 FSVLVALHLCCCHGQAPDAAGNSSDVTAIYSLGDSITDTGNLIKEAPPGMFE 61
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.1 bits (62), Expect = 3.1
Identities = 24/124 (19%), Positives = 49/124 (39%)
Frame = -1
Query: 464 LEEEPSAENDEDGTSATLRPXXXXXXXXXXXXXXXXXXSRAETTNSSVDDEAKIERELAE 285
LE+ S+ + + T+ L A N D E ++ER ++
Sbjct: 441 LEKAQSSVKELESTNGDLNDKIAVLQNEKNSLSSELQQLEASFENLGNDLEQELER-ISI 499
Query: 284 MYKDNSDYQTDRSEADSSSTTVHKEEGNXIARSRASGFKFQPNLNSREEIERFRTSVDDI 105
M+K+N D + S + TV ++ +A + G K + ++I + +V+++
Sbjct: 500 MHKNNEDLELVNSNLQNDLATVQGQKNEAVASTLELGNKLE---EKNQQISNLQEAVENL 556
Query: 104 SCDK 93
K
Sbjct: 557 EAAK 560
>11_05_0075 +
18856659-18856878,18856890-18857107,18858253-18858319,
18858706-18859397
Length = 398
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = +2
Query: 419 RWFRLRHSQPTAPLRGPEVVLLLGCRFQLSPVPGSPSAS*HCCSSRRPNGSLGEQENELD 598
RW RLR S+ LR P + L G Q P P SA +R G G ++ ++
Sbjct: 196 RWVRLRASRRLLRLRHPRFLPLRG-GGQSDPRPCRASA----LRRKRAEGEAGRRQRQIS 250
Query: 599 AFRLNVSSR 625
A R ++ R
Sbjct: 251 AGRRAIAGR 259
>10_08_0352 + 17091637-17091945,17092049-17096617,17096975-17097187,
17097266-17097494,17097857-17097981
Length = 1814
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = -1
Query: 251 RSEADSSSTTVHKEEGNXIARSRASGFKFQPNLNSREEIERFRTSVDDISCDKVTQRLGL 72
RS+ +SS G+ I + + +K N+N R+ IER S + +S V + +
Sbjct: 1217 RSKEHASSKQKVDTSGSVIEKVKEGRYK-SANINDRKHIERVHDSANKMSTTSVEKSIPE 1275
Query: 71 TEPPV 57
T P+
Sbjct: 1276 TVKPM 1280
>04_01_0082 +
897026-897028,897101-897350,898454-898608,898686-898967,
899078-899160,899335-899485,899896-899952,900279-900479
Length = 393
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +2
Query: 548 SSRRPNGSLGEQENEL----DAFRLNVSSRPS 631
SSR P+G+ E+E EL D FRL +S RP+
Sbjct: 11 SSRNPHGAPVEEEEELEDDFDEFRLPMSHRPT 42
>01_06_1296 + 36088467-36088582,36088697-36088819,36088938-36089607
Length = 302
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 487 Q*KNYLRASKRSRRLRMTKTEPAPLCVQERRGEPINPPRLQRLKL*AER 341
Q +YL RS RL +T P L +E +PP ++ + L A +
Sbjct: 15 QASSYLTDKIRSARLALTDVTPTQLMTEEATSGDASPPNVKTMSLIARQ 63
>11_06_0348 - 22561589-22563656,22563788-22564602
Length = 960
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -1
Query: 581 VLLTIHLAVAKNNNVKTLTESLGREIIEIDNPIKELPPGLEEEPSAENDEDGTSAT 414
V L ++ + N+K E++ +E+ + NPI G++ E + +E+ AT
Sbjct: 865 VALCYNVRYMNSPNIKRKVEAVSKEVAKHRNPIDLFIRGMQIEVNQAGEEEAEGAT 920
>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
Length = 489
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 392 PPSFLD-AEWRWFRLR--HSQPTAPLRGPEVVLLLGCRFQLSPVP 517
PP F + W FR R H+ APLR + +LL G + SP P
Sbjct: 139 PPRFQELGAWEGFRPRRQHAGVAAPLRFGQRMLLGGAERRWSPPP 183
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 19 SDPPFSVPTRCPHTGGSVNPN 81
+DPP P R P GG+ NPN
Sbjct: 9 ADPPRRSPWRHPSNGGNPNPN 29
>02_05_0891 - 32554355-32555305
Length = 316
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -1
Query: 341 ETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSS-STTVHKEEGNXIARSRASGFKF 165
ET + S DE++ E E + + + +E+DSS +EE + RS A+ +
Sbjct: 20 ETASGSDSDESEEEEEESPLAQPAPVVSNKGAESDSSGEEESEEEEEEDLVRSSATKSRD 79
Query: 164 QPNLNSREE 138
P N E+
Sbjct: 80 PPQENREED 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,293,114
Number of Sequences: 37544
Number of extensions: 377727
Number of successful extensions: 1138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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