Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13k13
(632 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC023532-1|AAH23532.1| 641|Homo sapiens WW domain binding prote... 33 1.1
BC016441-1|AAH16441.2| 400|Homo sapiens WBP11 protein protein. 33 1.1
BC001621-1|AAH01621.1| 641|Homo sapiens WW domain binding prote... 33 1.1
AF118023-1|AAD30425.1| 641|Homo sapiens SH3 domain-binding prot... 33 1.1
AB029309-1|BAA88410.1| 641|Homo sapiens Npw38-binding protein N... 33 1.1
BC128233-1|AAI28234.1| 284|Homo sapiens caudal type homeobox 4 ... 31 3.4
AL450108-1|CAI40795.1| 284|Homo sapiens caudal type homeobox tr... 31 3.4
AF029879-1|AAD01894.1| 284|Homo sapiens caudal-4 protein. 31 3.4
AF003530-1|AAB66319.1| 284|Homo sapiens homeobox protein CDX4 p... 31 3.4
BC045642-1|AAH45642.1| 582|Homo sapiens metadherin protein. 30 5.9
AY974040-1|AAX84832.1| 582|Homo sapiens LYRIC protein. 30 5.9
AY082966-1|AAL92861.1| 582|Homo sapiens LYRIC protein. 30 5.9
AF501310-1|AAP30791.1| 582|Homo sapiens LYRIC/3D3 protein. 30 5.9
AF411226-1|AAO65771.1| 582|Homo sapiens astrocyte elevated gene... 30 5.9
BC010381-1|AAH10381.1| 657|Homo sapiens THO complex 1 protein. 30 7.8
>BC023532-1|AAH23532.1| 641|Homo sapiens WW domain binding protein
11 protein.
Length = 641
Score = 32.7 bits (71), Expect = 1.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 299 RELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNXIARSRASGFKFQP 159
RE+ E +D+ + +D SEA+ S HKEE + S AS + P
Sbjct: 347 REVEEFSEDDDEDDSDDSEAEKQSQKQHKEESHSDGTSTASSQQQAP 393
>BC016441-1|AAH16441.2| 400|Homo sapiens WBP11 protein protein.
Length = 400
Score = 32.7 bits (71), Expect = 1.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 299 RELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNXIARSRASGFKFQP 159
RE+ E +D+ + +D SEA+ S HKEE + S AS + P
Sbjct: 106 REVEEFSEDDDEDDSDDSEAEKQSQKQHKEESHSDGTSTASSQQQAP 152
>BC001621-1|AAH01621.1| 641|Homo sapiens WW domain binding protein
11 protein.
Length = 641
Score = 32.7 bits (71), Expect = 1.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 299 RELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNXIARSRASGFKFQP 159
RE+ E +D+ + +D SEA+ S HKEE + S AS + P
Sbjct: 347 REVEEFSEDDDEDDSDDSEAEKQSQKQHKEESHSDGTSTASSQQQAP 393
>AF118023-1|AAD30425.1| 641|Homo sapiens SH3 domain-binding protein
SNP70 protein.
Length = 641
Score = 32.7 bits (71), Expect = 1.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 299 RELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNXIARSRASGFKFQP 159
RE+ E +D+ + +D SEA+ S HKEE + S AS + P
Sbjct: 347 REVEEFSEDDDEDDSDDSEAEKQSQKQHKEESHSDGTSTASSQQQAP 393
>AB029309-1|BAA88410.1| 641|Homo sapiens Npw38-binding protein
NpwBP protein.
Length = 641
Score = 32.7 bits (71), Expect = 1.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 299 RELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNXIARSRASGFKFQP 159
RE+ E +D+ + +D SEA+ S HKEE + S AS + P
Sbjct: 347 REVEEFSEDDDEDDSDDSEAEKQSQKQHKEESHSDGTSTASSQQQAP 393
>BC128233-1|AAI28234.1| 284|Homo sapiens caudal type homeobox 4
protein.
Length = 284
Score = 31.1 bits (67), Expect = 3.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 176 PTLCSWRSXYPPPCVQSWSYYPLPSDLFG 262
P+L W S Y PP + WS YP PS G
Sbjct: 67 PSLGVWGSPYSPPR-EDWSVYPGPSSTMG 94
>AL450108-1|CAI40795.1| 284|Homo sapiens caudal type homeobox
transcription factor 4 protein.
Length = 284
Score = 31.1 bits (67), Expect = 3.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 176 PTLCSWRSXYPPPCVQSWSYYPLPSDLFG 262
P+L W S Y PP + WS YP PS G
Sbjct: 67 PSLGVWGSPYSPPR-EDWSVYPGPSSTMG 94
>AF029879-1|AAD01894.1| 284|Homo sapiens caudal-4 protein.
Length = 284
Score = 31.1 bits (67), Expect = 3.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 176 PTLCSWRSXYPPPCVQSWSYYPLPSDLFG 262
P+L W S Y PP + WS YP PS G
Sbjct: 67 PSLGVWGSPYSPPR-EDWSVYPGPSSTMG 94
>AF003530-1|AAB66319.1| 284|Homo sapiens homeobox protein CDX4
protein.
Length = 284
Score = 31.1 bits (67), Expect = 3.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 176 PTLCSWRSXYPPPCVQSWSYYPLPSDLFG 262
P+L W S Y PP + WS YP PS G
Sbjct: 67 PSLGVWGSPYSPPR-EDWSVYPGPSSTMG 94
>BC045642-1|AAH45642.1| 582|Homo sapiens metadherin protein.
Length = 582
Score = 30.3 bits (65), Expect = 5.9
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Frame = -1
Query: 542 NVKTLTESLGREI-IEIDNPIKELPPGLEEEPS---AENDEDGTSATLRP 405
++KT++ S E+ ++ PIK LPP EPS +++D D +S+ + P
Sbjct: 489 SLKTISTSDPAEVLVKNSQPIKTLPPATSTEPSVILSKSDSDKSSSQVPP 538
>AY974040-1|AAX84832.1| 582|Homo sapiens LYRIC protein.
Length = 582
Score = 30.3 bits (65), Expect = 5.9
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Frame = -1
Query: 542 NVKTLTESLGREI-IEIDNPIKELPPGLEEEPS---AENDEDGTSATLRP 405
++KT++ S E+ ++ PIK LPP EPS +++D D +S+ + P
Sbjct: 489 SLKTISTSDPAEVLVKNSQPIKTLPPATSTEPSVILSKSDSDKSSSQVPP 538
>AY082966-1|AAL92861.1| 582|Homo sapiens LYRIC protein.
Length = 582
Score = 30.3 bits (65), Expect = 5.9
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Frame = -1
Query: 542 NVKTLTESLGREI-IEIDNPIKELPPGLEEEPS---AENDEDGTSATLRP 405
++KT++ S E+ ++ PIK LPP EPS +++D D +S+ + P
Sbjct: 489 SLKTISTSDPAEVLVKNSQPIKTLPPATSTEPSVILSKSDSDKSSSQVPP 538
>AF501310-1|AAP30791.1| 582|Homo sapiens LYRIC/3D3 protein.
Length = 582
Score = 30.3 bits (65), Expect = 5.9
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Frame = -1
Query: 542 NVKTLTESLGREI-IEIDNPIKELPPGLEEEPS---AENDEDGTSATLRP 405
++KT++ S E+ ++ PIK LPP EPS +++D D +S+ + P
Sbjct: 489 SLKTISTSDPAEVLVKNSQPIKTLPPATSTEPSVILSKSDSDKSSSQVPP 538
>AF411226-1|AAO65771.1| 582|Homo sapiens astrocyte elevated gene-1
AEG1 protein.
Length = 582
Score = 30.3 bits (65), Expect = 5.9
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Frame = -1
Query: 542 NVKTLTESLGREI-IEIDNPIKELPPGLEEEPS---AENDEDGTSATLRP 405
++KT++ S E+ ++ PIK LPP EPS +++D D +S+ + P
Sbjct: 489 SLKTISTSDPAEVLVKNSQPIKTLPPATSTEPSVILSKSDSDKSSSQVPP 538
>BC010381-1|AAH10381.1| 657|Homo sapiens THO complex 1 protein.
Length = 657
Score = 29.9 bits (64), Expect = 7.8
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -1
Query: 599 RLIHFLVLLTIHLAVAKNNNVKTLTESLGREIIEIDNPIKELPPGLEEEPSAEN-DEDGT 423
R + L + H N K+L E L +I++ KELPP EE + E+ DE+
Sbjct: 495 RALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKL---AKELPPPSEEIKTGEDEDEEDN 551
Query: 422 SATLR 408
A L+
Sbjct: 552 DALLK 556
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,074,727
Number of Sequences: 237096
Number of extensions: 1951526
Number of successful extensions: 5128
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5128
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -