Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k12
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    27   2.2  
SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase family|Sc...    27   2.2  
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    27   3.0  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    27   3.0  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   6.9  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    26   6.9  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.9  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   9.1  

>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 147 ADTKSEEVRKHCESTEVSFFRNDNKGYPVHPQNGNDEPRRRDQLDKKFLRRAYD 308
           A + S +V++  +   V  FRN +KG    P+ G      R +  KKFL R  D
Sbjct: 214 ASSGSFQVKRRWDEDVV--FRNTHKGVDDTPRPGFVNDMLRSEFHKKFLARFVD 265


>SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 103 VNIVDVLTFWT*G--AELTRRVRRCASIVSRQRFLSFV 210
           VNI D+L FWT G       RVR    + +RQ    FV
Sbjct: 228 VNIADMLQFWTSGKLRSTVHRVRIDPGVKTRQTIAYFV 265


>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = -3

Query: 735 DCGPFAVAPVLVTSXYPTRCEESPTCYPCLPHCPQSMVYCCDTRPKTP--LRRSSC 574
           DC  F +   L  +     C      YP L   P   +YCCD  P+    +++ SC
Sbjct: 46  DCY-FGLPDKLPLTILEVGCGVGNLVYPLLEVQPNLKIYCCDFSPRAIDFVKKHSC 100


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 216 YHYERKKPLSTHNACAPPHSSCQLCASSPECQYVNYIHAQP 94
           Y Y R     T  +C+ P + C    +SP   Y+NY    P
Sbjct: 384 YEYTRPTYGRTDTSCSAPGAFCSTQINSPS-SYINYSKCAP 423


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 204 FRNDNKGYPVHPQNGNDEPRRRDQLDKKFLRRAYD 308
           +RND   +    +  ND  R RD+ D  + ++ YD
Sbjct: 205 YRNDRNNW--RERTHNDRYRHRDKYDSGYFKKHYD 237


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 210 NDNKGYPVHPQNGNDEPRRRDQL 278
           N NK      +NGNDE R  D L
Sbjct: 419 NGNKSEQEEKENGNDETRSNDSL 441


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 190 QRFLSFVMITKVTLFILRMVTMNLVVGISSIRSFYEGLTTPTDSRCHL 333
           Q+FL F+  T +TLFIL  +T     G++   S +  + TP    C +
Sbjct: 724 QQFLVFLTFTGMTLFILYQLT--FPYGVAKDNSSF--IDTPLPHSCEM 767


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 273 DPYDEVHRYHSEDEQGNLCYH-YERKKPLSTHNACAPPHSSCQLCAS 136
           D +  + +   EDE+GNL +H  E  K  +     +PP S  +  AS
Sbjct: 251 DEFPMIEKLLREDEEGNLWFHASEDAKKFAEVYGHSPPASPSRTPAS 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,954
Number of Sequences: 5004
Number of extensions: 54423
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)