Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k12
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716...    31   0.77 
07_03_1697 - 28795521-28797328,28797430-28797550                       30   1.8  
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008...    30   2.4  
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251...    29   4.1  
11_06_0154 + 20707811-20708210,20709252-20709523                       28   7.2  
01_05_0135 + 18460416-18460482,18460614-18460942                       28   9.5  

>01_05_0420 +
           21969797-21970939,21971307-21971369,21971488-21971616,
           21972241-21972291,21972669-21972809,21972922-21973122,
           21973201-21973419,21973582-21973700,21973772-21973862,
           21975864-21975965,21976291-21976315,21976522-21976592
          Length = 784

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -3

Query: 255 HRY-HSEDEQGNLCYHYERKKPLSTHNACAPPHSSCQLCASSPECQYVNYIHAQPLH 88
           H Y H + +QGNLC       PL+    C   H +   C    +C Y + +   P H
Sbjct: 436 HFYLHGKCQQGNLCKFSHDTTPLTKSKPCT--HYARGSCLKGDDCPYDHELSKYPCH 490


>07_03_1697 - 28795521-28797328,28797430-28797550
          Length = 642

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 219 CYHYERKKPLSTHNACAPPHSSCQLCAS 136
           C H  R  P S H+ C PPH   Q C S
Sbjct: 355 CCHDARHGP-SCHHGCCPPHHGKQACTS 381


>06_03_1075 +
           27399279-27399376,27399449-27399555,27400791-27400898,
           27401763-27401860,27401983-27402033,27402137-27402228,
           27402360-27402459,27402765-27402884,27402977-27403045,
           27403299-27403345,27403428-27403483,27404760-27404800,
           27405155-27405260,27406728-27406860,27406937-27407357
          Length = 548

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
 Frame = +3

Query: 156 KSEEVRKHCESTEVSFFRNDNKGYPVHP-----QNGNDEPRR--------RDQLDKKFLR 296
           K E+  ++C+  E S  R+D++GY  H      ++G+D+ RR        RD+ D +   
Sbjct: 475 KHEDYNRYCKPGERSSSRHDDRGYSKHESRSKYRDGDDDYRRQSGGSRYGRDKCDGERRY 534

Query: 297 RAYDAHG 317
           R  D HG
Sbjct: 535 RGDDDHG 541


>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
            30326409-30326798,30326896-30330060
          Length = 2144

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = -3

Query: 267  YDEVHRYHSEDEQGNLC-YHYERKKPLSTHNACAPPHSS----CQLCASSPECQYVN 112
            YD    Y    + G +  Y+Y   + +ST+N C  P       C+L + S E +YV+
Sbjct: 976  YDRKTGYFQVTDLGRIASYYYVSHRTISTYNECLKPTMGDIELCRLFSLSEEFKYVS 1032


>11_06_0154 + 20707811-20708210,20709252-20709523
          Length = 223

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 118 VLTFWT*GAELTRRVRRCASIVSRQRFLSFVMITKVTLFILRMVTMNLVVGISSI 282
           V  FW      TRR R+ AS  +RQ  ++   +  +  F+L+   +N  VG  ++
Sbjct: 117 VFVFWKSATMTTRRDRQEASASNRQFLITPFRLLCIHSFVLQPSELNFEVGYINV 171


>01_05_0135 + 18460416-18460482,18460614-18460942
          Length = 131

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 713 PRFLLHLXIQPDVRNHPRATRACHTAHNLWFTVVT 609
           PR LLHL + P  RN    TR C    +L    ++
Sbjct: 75  PRTLLHLPLPPSHRNRCAITRICQEICHLCLETIS 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,764,131
Number of Sequences: 37544
Number of extensions: 372606
Number of successful extensions: 1063
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)