Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k12
         (770 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB039903-1|BAB17050.1|  842|Homo sapiens interferon-responsive f...    37   0.092
BC133677-1|AAI33678.1|  194|Homo sapiens KRTAP10-3 protein protein.    31   6.0  
BC130511-1|AAI30512.1|   98|Homo sapiens late cornified envelope...    30   8.0  
BC130507-1|AAI30508.1|   98|Homo sapiens late cornified envelope...    30   8.0  
BC087854-1|AAH87854.1|   98|Homo sapiens late cornified envelope...    30   8.0  
AL161636-2|CAI19557.1|   98|Homo sapiens novel small proline ric...    30   8.0  

>AB039903-1|BAB17050.1|  842|Homo sapiens interferon-responsive
           finger protein 1 long form protein.
          Length = 842

 Score = 36.7 bits (81), Expect = 0.092
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +1

Query: 85  RMQWLCVNIVDVLTFWT*GAELTRRVRRCASIVSRQRFLSFVMITKVTLFILRMVT 252
           RM  +C  + DV ++W     LTRR RR + + +R+   S  M +K+ L +   VT
Sbjct: 313 RMLRVCRELTDVQSYWAIQGSLTRRERRASGVRTRRSQGSSAMASKILLNVQEEVT 368


>BC133677-1|AAI33678.1|  194|Homo sapiens KRTAP10-3 protein protein.
          Length = 194

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
 Frame = -3

Query: 747 CYPEDCGPF--AVAPVLVTSXYPTRCEESPTCY------PCLPHCPQSMV-YCCDTRPKT 595
           C P  C P   A+AP L     P  C  SP C       PC   C  S    CC      
Sbjct: 27  CEPPCCAPSCCALAPCLTLVCTPVSCVSSPCCQAACEPSPCQSGCTSSCTPSCCQQSSCQ 86

Query: 594 PLRRSSCCDS 565
           P    +CC S
Sbjct: 87  P----ACCTS 92


>BC130511-1|AAI30512.1|   98|Homo sapiens late cornified
           envelope-like proline-rich 1 protein.
          Length = 98

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 696 SXYPTRCEESPTCYPCLPHCPQSMVYCC 613
           S  P+ C   P   PC P CP S  + C
Sbjct: 63  SQSPSSCPPQPCTKPCPPKCPSSCPHAC 90


>BC130507-1|AAI30508.1|   98|Homo sapiens late cornified
           envelope-like proline-rich 1 protein.
          Length = 98

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 696 SXYPTRCEESPTCYPCLPHCPQSMVYCC 613
           S  P+ C   P   PC P CP S  + C
Sbjct: 63  SQSPSSCPPQPCTKPCPPKCPSSCPHAC 90


>BC087854-1|AAH87854.1|   98|Homo sapiens late cornified
           envelope-like proline-rich 1 protein.
          Length = 98

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 696 SXYPTRCEESPTCYPCLPHCPQSMVYCC 613
           S  P+ C   P   PC P CP S  + C
Sbjct: 63  SQSPSSCPPQPCTKPCPPKCPSSCPHAC 90


>AL161636-2|CAI19557.1|   98|Homo sapiens novel small proline rich
           protein protein.
          Length = 98

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 696 SXYPTRCEESPTCYPCLPHCPQSMVYCC 613
           S  P+ C   P   PC P CP S  + C
Sbjct: 63  SQSPSSCPPQPCTKPCPPKCPSSCPHAC 90


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,516,665
Number of Sequences: 237096
Number of extensions: 2094158
Number of successful extensions: 5436
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5424
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)