Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k12
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z81056-3|CAB02910.1|  718|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine rece...    28   6.4  

>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -3

Query: 735  DCGPFAVAPVLVTSXYPTRCEESPTCYP-CLPH-CPQSMVYCCDTRPKTPLRRSSCCDSK 562
            +CG   ++ V ++  Y   C  S T    C P  CP     CC  R K  + R+  C S 
Sbjct: 828  NCGVTTLSRVCLSQDYNCACSGSTTKQSECAPAPCPFPRTSCCGARKKVIVGRTFECSSA 887

Query: 561  E 559
            +
Sbjct: 888  D 888


>Z81056-3|CAB02910.1|  718|Caenorhabditis elegans Hypothetical
           protein F09F3.5 protein.
          Length = 718

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 147 ADTKSEEVRKHCESTEVSFFRNDNKGYPVHPQNGND 254
           AD ++E VR   E   ++F   D+ GY + PQN ND
Sbjct: 323 ADCEAETVRSFQEGKMLTF---DDLGYTLPPQNAND 355


>U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 2 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = -1

Query: 251 VTILRMNRVTFVIITKERNLCRLTMLAHLLTLRVSSAPQV---QNVNTSTIFTH 99
           +T+LR+ R++  +++ ER LC  + L     L  ++A  +   Q V TST  ++
Sbjct: 223 ITVLRLTRMSKRLVSSERTLCIASFLISSCFLGTAAAESLFAFQVVRTSTSISY 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,952,989
Number of Sequences: 27780
Number of extensions: 322484
Number of successful extensions: 1166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)