Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13k11
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||... 29 0.82
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 29 1.1
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 28 1.9
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.5
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 2.5
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.3
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.4
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 26 7.6
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 26 7.6
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 26 7.6
>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.82
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = -2
Query: 334 NIFNLDNDADSIINSLDSDSTKTITEKTLNTSCK----NVFLRKMEATTSLNEKL----Y 179
+I NLD+ II + SD + T NT C + ++ ME + +E+ Y
Sbjct: 230 SISNLDHIGMKIIETKSSDDFSEYLKTTQNTICGRYPIELIMKSMEC-ANFSERFKFISY 288
Query: 178 RLSGHLGLKTPSQLSFGT 125
S H+ L T S +S+ T
Sbjct: 289 AQSSHVELVTDSSVSYAT 306
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Frame = -2
Query: 445 CDNMMSVQIDVIRELSQVQLELMALNLQKLWRQESQTNIFNLD---------NDADSIIN 293
C N++ +Q+D++ +L+ + E LQ ++ + + LD + ADSI++
Sbjct: 1062 CANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKETNERLSTADSILS 1121
Query: 292 SLDSDSTK---TITEKTLNTSCKNVFLRKMEA 206
+D+++ + +K +T ++V L K A
Sbjct: 1122 LIDTEALSRYYSCQQKVEDTIPRDVVLEKKMA 1153
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -2
Query: 367 LQKLW-RQESQTNIFNLDNDADSIINSLDSDSTKTITEKTLNTSCKNVFLRKMEATTSLN 191
+QK++ + + + L + + N S + ++ + C N +RK+ T++LN
Sbjct: 211 VQKIYFTSRTHSQLQQLVQEIKKLNNQTFSTPIRVVSLASRKNLCINNEVRKLRPTSALN 270
Query: 190 EKLYRLSG 167
EK L G
Sbjct: 271 EKCIELQG 278
>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 206
Score = 27.5 bits (58), Expect = 2.5
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 6/140 (4%)
Frame = -2
Query: 658 RKLFAFTHKWLMR-AKHYYDFEHHSAQYISCSLQLAELYEHLAFFERNIDNQYSIQKRRA 482
RK ++W + A Y+D +++ +Y S L + + D +YS K +A
Sbjct: 29 RKKNLGNNEWRFKNAGEYFDEDNNEEEYPSLE-SLKTVGNGDTIQDEEEDFEYS--KLQA 85
Query: 481 DVLENLN-SLLKTCDNMMSVQIDVIRE-LSQVQLELMALNLQKLWR-QESQTNIFNLD-- 317
L L S K + ++Q + + + L V+ E +K + Q+ + NI + +
Sbjct: 86 RPLTGLGISNQKPKSKVRTIQREEVADMLESVEHEKSIQEFRKRYNVQKPKVNISHAEAE 145
Query: 316 NDADSIINSLDSDSTKTITE 257
D DS + S+D + +ITE
Sbjct: 146 EDIDSFLESMDQSAPPSITE 165
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -2
Query: 367 LQKLWRQESQTNIFNLDNDADSIINSLDSDSTKTITEKTLNTSCKNV 227
L ++ R +NIFN DN+ S +++ T + N KN+
Sbjct: 37 LSEMKRHPLYSNIFNADNNTTSFTEQIETSETSKTQDSEGNKVDKNL 83
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 27.1 bits (57), Expect = 3.3
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -2
Query: 424 QIDVIRELSQVQLELMALNLQKLWRQESQTNIFNLDNDADSIINSLDSDSTKTITE-KTL 248
Q++ E S +E L ++ ++++ ++ D+D D IIN D + + +E TL
Sbjct: 274 QLESSLEKSSTAIENAQNRLAEMTAHLAESSDYDNDDDTDGIINETDYELDTSQSEFATL 333
Query: 247 NTSCKNVFLRK 215
TS L +
Sbjct: 334 TTSSNKSILNE 344
>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 430 TSCCRRSLTKNSG-FLKRQRGASVC 501
++CCR S T N+G F RQ S+C
Sbjct: 37 SNCCRNSYTVNNGTFTGRQIYTSIC 61
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +3
Query: 111 FFSIPVPKLSCEGVLSPKCPLRRYSFSFKEVVASILRRNTFLHDVLRVFSVIVLVESESK 290
++S+P+ + LR ++S SIL+ N FLHD ++ ++ E+ +
Sbjct: 207 YYSLPITYFHSKAEKKVTEFLRNRNWSRSITECSILQNNEFLHDSEKLIDHLI-HETGNN 265
Query: 291 EFMIESA 311
E + SA
Sbjct: 266 ELPVASA 272
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.8 bits (54), Expect = 7.6
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 1/113 (0%)
Frame = -2
Query: 589 SAQYISCSLQLAELYEHLAFFERNIDNQYS-IQKRRADVLENLNSLLKTCDNMMSVQIDV 413
S Q ++ + L E L ++ D+ S I AD + SLLK +
Sbjct: 223 STQMSEVNISIKLLNEILLSSKKEKDSSTSFISTAVADYTNKILSLLKK-EEAPDELTQK 281
Query: 412 IRELSQVQLELMALNLQKLWRQESQTNIFNLDNDADSIINSLDSDSTKTITEK 254
+ E+ + LE +N+ K+W + I + D + I ++ D D E+
Sbjct: 282 LLEVLGLLLEYQQVNILKIWPELHGLLISKISYDPNLISDTNDEDDIADFLEE 334
>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
Spo14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 728 SLIRFDRNGKQSTFRFGM 675
SL+RFD + K +RFGM
Sbjct: 233 SLVRFDYSSKNQLWRFGM 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,949
Number of Sequences: 5004
Number of extensions: 53160
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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