Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k11
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0404 + 3200787-3200898,3201016-3201091,3201442-3201544,320...    29   3.5  
08_02_1137 + 24623967-24623991,24625815-24625831,24626100-246262...    29   4.6  
01_06_0280 + 28129750-28129868,28130677-28131145,28133605-281338...    29   4.6  
11_06_0127 - 20386764-20386938,20387604-20387716                       28   8.1  

>12_01_0404 +
           3200787-3200898,3201016-3201091,3201442-3201544,
           3202109-3202160,3202239-3202333,3202703-3202768,
           3202910-3203419,3203598-3203756,3204022-3204321,
           3204867-3205193,3205548-3205754,3205978-3206076,
           3206193-3206251,3206294-3206639
          Length = 836

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
 Frame = -2

Query: 451 KTCDNMMSVQIDVIRELSQVQLELMALNLQKLWRQESQTNIFNLDNDADSIINSLDSDST 272
           K  + +M    + +  L + Q EL +   ++      +  + ++DNDADS   +L +D  
Sbjct: 138 KKLNKLMDKDPEFVNYLEKWQSELKSDGSKE---DSDEDEMDSVDNDADSSDENLSND-- 192

Query: 271 KTITEKTLNTSCKNVFLRKMEATTSLNEKL--YRLSGHLGL-KTPS 143
           K +T KT++  C+   + K     SL   L  YR +   G+ K+PS
Sbjct: 193 KILTRKTISEWCQ--LVAKEPKAPSLRSLLNAYRDACRFGVSKSPS 236


>08_02_1137 +
           24623967-24623991,24625815-24625831,24626100-24626216,
           24626399-24626440,24627246-24629705
          Length = 886

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +2

Query: 8   SSTMIFIYLGVFSI*YY---LGFHSN*VNL*FC*LFSVFQYSSSKTKLRRRLKSQMSAQA 178
           +ST+ F+ LG  S  ++   +GF  + + L  C ++  +  + S  +  + LKS++  Q 
Sbjct: 39  ASTLHFLLLGQRSQEWFFCGIGFLKDTLPLRSCDVYIGYHGNGSLGRFCKWLKSELELQG 98

Query: 179 IQLFIQRSGSFHLTQKHILA 238
           I  F+     +  TQ H +A
Sbjct: 99  IASFVADRAKYSDTQSHEIA 118


>01_06_0280 +
           28129750-28129868,28130677-28131145,28133605-28133802,
           28134168-28134412,28134749-28134907,28135491-28135578,
           28135983-28136264
          Length = 519

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 505 IGCLCSSRRKQGAHTTQRAVENTICIEPNGVQSRS 609
           I  LC+SR   G H + R V++ + ++ +GV + S
Sbjct: 336 IDSLCTSRGASGEHESSRRVKSELLVQIDGVNNSS 370


>11_06_0127 - 20386764-20386938,20387604-20387716
          Length = 95

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = -2

Query: 598 EHHSAQYISCSLQLAELYEHLAFFERNIDNQYSIQKRRADVLENLNSLLKTCDNMM 431
           +H S +  S +L++A LY  +  F+R +  +  I+    D L  LNS    CD+++
Sbjct: 38  KHCSFECQSKNLKIAFLYPVVVNFDRQLSKEAEIENYHLDALIKLNS----CDHII 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,556,420
Number of Sequences: 37544
Number of extensions: 308701
Number of successful extensions: 960
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)