Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13k11
(839 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC012180-1|AAH12180.1| 621|Homo sapiens KIAA1279 protein. 43 0.001
AL359844-4|CAH72378.1| 621|Homo sapiens KIAA1279 protein. 43 0.001
AB033105-1|BAA86593.1| 632|Homo sapiens KIAA1279 protein protein. 43 0.001
AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F, 3... 34 0.56
AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F, 3... 34 0.56
U52962-1|AAD10838.1| 3321|Homo sapiens kendrin protein. 32 2.3
AF515282-1|AAP46636.1| 3336|Homo sapiens pericentrin B protein. 32 2.3
AB007862-1|BAA23698.3| 3284|Homo sapiens KIAA0402 protein. 32 2.3
U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein. 32 3.0
U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protei... 32 3.0
BC036647-1|AAH36647.2| 940|Homo sapiens C10orf79 protein protein. 31 3.9
AL833836-1|CAD38696.1| 996|Homo sapiens hypothetical protein pr... 31 3.9
AL357336-5|CAI40459.1| 870|Homo sapiens novel protein protein. 31 3.9
AL357336-3|CAI40457.1| 996|Homo sapiens novel protein protein. 31 3.9
AL139341-4|CAI17223.1| 870|Homo sapiens novel protein protein. 31 3.9
AL139341-1|CAI17220.1| 996|Homo sapiens novel protein protein. 31 3.9
>BC012180-1|AAH12180.1| 621|Homo sapiens KIAA1279 protein.
Length = 621
Score = 43.2 bits (97), Expect = 0.001
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = -2
Query: 706 MESKVPLGLVCTAEDARKLFAFTHKWLMRAKHYYDFEHHSAQYISCSLQLAELYEHLAFF 527
+E KV E+AR+LF ++ AK ++ + + +I + L++ LAFF
Sbjct: 377 VEEKVSYLRPLDFEEARELFLLGQHYVFEAKEFFQIDGYVTDHIEVVQDHSALFKVLAFF 436
Query: 526 ERNIDNQYSIQKRRADVLENL 464
E +++ + + KRR +LE L
Sbjct: 437 ETDMERRCKMHKRRIAMLEPL 457
>AL359844-4|CAH72378.1| 621|Homo sapiens KIAA1279 protein.
Length = 621
Score = 43.2 bits (97), Expect = 0.001
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = -2
Query: 706 MESKVPLGLVCTAEDARKLFAFTHKWLMRAKHYYDFEHHSAQYISCSLQLAELYEHLAFF 527
+E KV E+AR+LF ++ AK ++ + + +I + L++ LAFF
Sbjct: 377 VEEKVSYLRPLDFEEARELFLLGQHYVFEAKEFFQIDGYVTDHIEVVQDHSALFKVLAFF 436
Query: 526 ERNIDNQYSIQKRRADVLENL 464
E +++ + + KRR +LE L
Sbjct: 437 ETDMERRCKMHKRRIAMLEPL 457
>AB033105-1|BAA86593.1| 632|Homo sapiens KIAA1279 protein protein.
Length = 632
Score = 43.2 bits (97), Expect = 0.001
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = -2
Query: 706 MESKVPLGLVCTAEDARKLFAFTHKWLMRAKHYYDFEHHSAQYISCSLQLAELYEHLAFF 527
+E KV E+AR+LF ++ AK ++ + + +I + L++ LAFF
Sbjct: 388 VEEKVSYLRPLDFEEARELFLLGQHYVFEAKEFFQIDGYVTDHIEVVQDHSALFKVLAFF 447
Query: 526 ERNIDNQYSIQKRRADVLENL 464
E +++ + + KRR +LE L
Sbjct: 448 ETDMERRCKMHKRRIAMLEPL 468
>AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F,
350/400ka (mitosin) protein.
Length = 3114
Score = 34.3 bits (75), Expect = 0.56
Identities = 35/103 (33%), Positives = 50/103 (48%)
Frame = -2
Query: 409 RELSQVQLELMALNLQKLWRQESQTNIFNLDNDADSIINSLDSDSTKTITEKTLNTSCKN 230
R L ++Q EL L KL ++E Q F LD S+ +L K EKT T+ K
Sbjct: 15 RALQKIQ-ELEG-QLDKL-KKEKQQRQFQLD----SLEAALQKQKQKVENEKTEGTNLKR 67
Query: 229 VFLRKMEATTSLNEKLYRLSGHLGLKTPSQLSFGTGILKN*KQ 101
R ME SL + ++S L +K SQ++F G L + K+
Sbjct: 68 ENQRLMEICESLEKTKQKISHELQVK-ESQVNFQEGQLNSGKK 109
>AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F,
350/400ka (mitosin) protein.
Length = 3114
Score = 34.3 bits (75), Expect = 0.56
Identities = 35/103 (33%), Positives = 50/103 (48%)
Frame = -2
Query: 409 RELSQVQLELMALNLQKLWRQESQTNIFNLDNDADSIINSLDSDSTKTITEKTLNTSCKN 230
R L ++Q EL L KL ++E Q F LD S+ +L K EKT T+ K
Sbjct: 15 RALQKIQ-ELEG-QLDKL-KKEKQQRQFQLD----SLEAALQKQKQKVENEKTEGTNLKR 67
Query: 229 VFLRKMEATTSLNEKLYRLSGHLGLKTPSQLSFGTGILKN*KQ 101
R ME SL + ++S L +K SQ++F G L + K+
Sbjct: 68 ENQRLMEICESLEKTKQKISHELQVK-ESQVNFQEGQLNSGKK 109
>U52962-1|AAD10838.1| 3321|Homo sapiens kendrin protein.
Length = 3321
Score = 32.3 bits (70), Expect = 2.3
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = -2
Query: 556 AELYEHLAFFERNIDNQYSIQKRRADVLENLNSLLKTCDNMMSVQIDVIRELSQVQ 389
+E+ E A E +NQ +QK +A+ +E L+ +++ + +S+ V+ E+S Q
Sbjct: 1701 SEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLMGPVVHEVSDSQ 1756
>AF515282-1|AAP46636.1| 3336|Homo sapiens pericentrin B protein.
Length = 3336
Score = 32.3 bits (70), Expect = 2.3
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = -2
Query: 556 AELYEHLAFFERNIDNQYSIQKRRADVLENLNSLLKTCDNMMSVQIDVIRELSQVQ 389
+E+ E A E +NQ +QK +A+ +E L+ +++ + +S+ V+ E+S Q
Sbjct: 1712 SEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLMGPVVHEVSDSQ 1767
>AB007862-1|BAA23698.3| 3284|Homo sapiens KIAA0402 protein.
Length = 3284
Score = 32.3 bits (70), Expect = 2.3
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = -2
Query: 556 AELYEHLAFFERNIDNQYSIQKRRADVLENLNSLLKTCDNMMSVQIDVIRELSQVQ 389
+E+ E A E +NQ +QK +A+ +E L+ +++ + +S+ V+ E+S Q
Sbjct: 1739 SEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHELSLMGPVVHEVSDSQ 1794
>U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein.
Length = 3113
Score = 31.9 bits (69), Expect = 3.0
Identities = 34/103 (33%), Positives = 50/103 (48%)
Frame = -2
Query: 409 RELSQVQLELMALNLQKLWRQESQTNIFNLDNDADSIINSLDSDSTKTITEKTLNTSCKN 230
R L ++Q EL L KL ++E Q F LD S+ + + K EKT T+ K
Sbjct: 15 RALQKIQ-ELEG-QLDKL-KKEKQQRQFQLD----SLEAAPQKQTQKVENEKTEGTNLKR 67
Query: 229 VFLRKMEATTSLNEKLYRLSGHLGLKTPSQLSFGTGILKN*KQ 101
R ME SL + ++S L +K SQ++F G L + K+
Sbjct: 68 ENQRLMEICESLEKTKQKISHELQVK-ESQVNFQEGQLNSGKK 109
>U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protein
protein.
Length = 3210
Score = 31.9 bits (69), Expect = 3.0
Identities = 34/103 (33%), Positives = 50/103 (48%)
Frame = -2
Query: 409 RELSQVQLELMALNLQKLWRQESQTNIFNLDNDADSIINSLDSDSTKTITEKTLNTSCKN 230
R L ++Q EL L KL ++E Q F LD S+ + + K EKT T+ K
Sbjct: 15 RTLQKIQ-ELEG-QLDKL-KKEKQQRQFQLD----SLEAAPQKQTQKVENEKTEGTNLKR 67
Query: 229 VFLRKMEATTSLNEKLYRLSGHLGLKTPSQLSFGTGILKN*KQ 101
R ME SL + ++S L +K SQ++F G L + K+
Sbjct: 68 ENQRLMEICESLEKTKQKISHELQVK-ESQVNFQEGQLNSGKK 109
>BC036647-1|AAH36647.2| 940|Homo sapiens C10orf79 protein protein.
Length = 940
Score = 31.5 bits (68), Expect = 3.9
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = -2
Query: 493 KRRADVLENLNSLLKTCDNMMSVQIDVIRELSQVQLELMALNLQKLWR--QESQTNIFNL 320
K+R ++ + + SL KT NMM + D + ++++ + L+L++L R ESQ + +
Sbjct: 806 KKRKEIKQGIKSLSKTILNMME-ENDKLENIAKLDQQEFGLDLEELERLHDESQEEVAKM 864
Query: 319 DNDADSIINSLDSDSTKTITEKTLNT 242
D + + N S + I E+ N+
Sbjct: 865 IKDVE-MHNLAKSYLAELIKEECWNS 889
>AL833836-1|CAD38696.1| 996|Homo sapiens hypothetical protein
protein.
Length = 996
Score = 31.5 bits (68), Expect = 3.9
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = -2
Query: 493 KRRADVLENLNSLLKTCDNMMSVQIDVIRELSQVQLELMALNLQKLWR--QESQTNIFNL 320
K+R ++ + + SL KT NMM + D + ++++ + L+L++L R ESQ + +
Sbjct: 165 KKRKEIKQGIKSLSKTILNMME-ENDKLENIAKLDQQEFGLDLEELERLHDESQEEVAKM 223
Query: 319 DNDADSIINSLDSDSTKTITEKTLNT 242
D + + N S + I E+ N+
Sbjct: 224 IKDVE-MHNLAKSYLAELIKEECWNS 248
>AL357336-5|CAI40459.1| 870|Homo sapiens novel protein protein.
Length = 870
Score = 31.5 bits (68), Expect = 3.9
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = -2
Query: 493 KRRADVLENLNSLLKTCDNMMSVQIDVIRELSQVQLELMALNLQKLWR--QESQTNIFNL 320
K+R ++ + + SL KT NMM + D + ++++ + L+L++L R ESQ + +
Sbjct: 736 KKRKEIKQGIKSLSKTILNMME-ENDKLENIAKLDQQEFGLDLEELERLHDESQEEVAKM 794
Query: 319 DNDADSIINSLDSDSTKTITEKTLNT 242
D + + N S + I E+ N+
Sbjct: 795 IKDVE-MHNLAKSYLAELIKEECWNS 819
>AL357336-3|CAI40457.1| 996|Homo sapiens novel protein protein.
Length = 996
Score = 31.5 bits (68), Expect = 3.9
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = -2
Query: 493 KRRADVLENLNSLLKTCDNMMSVQIDVIRELSQVQLELMALNLQKLWR--QESQTNIFNL 320
K+R ++ + + SL KT NMM + D + ++++ + L+L++L R ESQ + +
Sbjct: 165 KKRKEIKQGIKSLSKTILNMME-ENDKLENIAKLDQQEFGLDLEELERLHDESQEEVAKM 223
Query: 319 DNDADSIINSLDSDSTKTITEKTLNT 242
D + + N S + I E+ N+
Sbjct: 224 IKDVE-MHNLAKSYLAELIKEECWNS 248
>AL139341-4|CAI17223.1| 870|Homo sapiens novel protein protein.
Length = 870
Score = 31.5 bits (68), Expect = 3.9
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = -2
Query: 493 KRRADVLENLNSLLKTCDNMMSVQIDVIRELSQVQLELMALNLQKLWR--QESQTNIFNL 320
K+R ++ + + SL KT NMM + D + ++++ + L+L++L R ESQ + +
Sbjct: 736 KKRKEIKQGIKSLSKTILNMME-ENDKLENIAKLDQQEFGLDLEELERLHDESQEEVAKM 794
Query: 319 DNDADSIINSLDSDSTKTITEKTLNT 242
D + + N S + I E+ N+
Sbjct: 795 IKDVE-MHNLAKSYLAELIKEECWNS 819
>AL139341-1|CAI17220.1| 996|Homo sapiens novel protein protein.
Length = 996
Score = 31.5 bits (68), Expect = 3.9
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = -2
Query: 493 KRRADVLENLNSLLKTCDNMMSVQIDVIRELSQVQLELMALNLQKLWR--QESQTNIFNL 320
K+R ++ + + SL KT NMM + D + ++++ + L+L++L R ESQ + +
Sbjct: 165 KKRKEIKQGIKSLSKTILNMME-ENDKLENIAKLDQQEFGLDLEELERLHDESQEEVAKM 223
Query: 319 DNDADSIINSLDSDSTKTITEKTLNT 242
D + + N S + I E+ N+
Sbjct: 224 IKDVE-MHNLAKSYLAELIKEECWNS 248
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,610,085
Number of Sequences: 237096
Number of extensions: 1679379
Number of successful extensions: 4299
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4298
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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