Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k11
         (839 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011038-1|AAR30198.1|  404|Drosophila melanogaster RE35653p pro...    82   8e-16
AE014134-826|AAF52187.1|  600|Drosophila melanogaster CG14043-PA...    82   8e-16
BT029111-1|ABJ17044.1|  935|Drosophila melanogaster IP14884p pro...    31   2.0  
AE014296-304|AAS64931.1|  446|Drosophila melanogaster CG33230-PA...    31   2.6  
AE014298-2744|AAF48863.1| 1895|Drosophila melanogaster CG15040-P...    30   3.4  

>BT011038-1|AAR30198.1|  404|Drosophila melanogaster RE35653p
           protein.
          Length = 404

 Score = 82.2 bits (194), Expect = 8e-16
 Identities = 40/92 (43%), Positives = 55/92 (59%)
 Frame = -2

Query: 727 PSLDLIEMESKVPLGLVCTAEDARKLFAFTHKWLMRAKHYYDFEHHSAQYISCSLQLAEL 548
           P LDL   E+++      T +DA+ +F F ++WL  AK YY  E+ + +Y       AE 
Sbjct: 147 PGLDLTACENRISCEYCLTFDDAKLVFHFVNEWLDIAKDYYKAENEATEYSKIMQDYAEA 206

Query: 547 YEHLAFFERNIDNQYSIQKRRADVLENLNSLL 452
           YEH+AFFE N +NQ  +QKRRA  LE+L  LL
Sbjct: 207 YEHIAFFEENPENQAKMQKRRAKYLEDLLDLL 238


>AE014134-826|AAF52187.1|  600|Drosophila melanogaster CG14043-PA
           protein.
          Length = 600

 Score = 82.2 bits (194), Expect = 8e-16
 Identities = 40/92 (43%), Positives = 55/92 (59%)
 Frame = -2

Query: 727 PSLDLIEMESKVPLGLVCTAEDARKLFAFTHKWLMRAKHYYDFEHHSAQYISCSLQLAEL 548
           P LDL   E+++      T +DA+ +F F ++WL  AK YY  E+ + +Y       AE 
Sbjct: 343 PGLDLTACENRISCEYCLTFDDAKLVFHFVNEWLDIAKDYYKAENEATEYSKIMQDYAEA 402

Query: 547 YEHLAFFERNIDNQYSIQKRRADVLENLNSLL 452
           YEH+AFFE N +NQ  +QKRRA  LE+L  LL
Sbjct: 403 YEHIAFFEENPENQAKMQKRRAKYLEDLLDLL 434


>BT029111-1|ABJ17044.1|  935|Drosophila melanogaster IP14884p
           protein.
          Length = 935

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -2

Query: 454 LKTCDNMMSVQIDVIRELSQVQLELMALNLQKLWRQESQTNIFNLDNDADSIINS---LD 284
           L++C       +D+    S   +E   + L  L     ++ IF LD  ADS INS   LD
Sbjct: 717 LESCKLQEEKSVDIASVNSDENIESAVVELTIL-----ESEIFPLDTTADSSINSTNVLD 771

Query: 283 SDSTKTITEKTL 248
           S   KTI ++ L
Sbjct: 772 SSVEKTIPDRNL 783



 Score = 30.3 bits (65), Expect = 3.4
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -2

Query: 340 QTNIFNLDNDADSIINS---LDSDSTKTITEKTLN 245
           ++ IF LD   DS INS   LDS   KTI E  LN
Sbjct: 815 ESEIFPLDTTVDSSINSTNVLDSSVEKTIPEHNLN 849


>AE014296-304|AAS64931.1|  446|Drosophila melanogaster CG33230-PA
           protein.
          Length = 446

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 633 LCVKAKSFLASSAVHTKPKGTLLSISIKSNEGKLKKLFXE 752
           LC K K+F     +   P G L+SI+   ++G  K LF E
Sbjct: 52  LCSKQKTFSPEDELIRLPIGCLISIATLESDGPFKSLFDE 91


>AE014298-2744|AAF48863.1| 1895|Drosophila melanogaster CG15040-PA
            protein.
          Length = 1895

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
 Frame = -2

Query: 523  RNIDNQYSIQKRRADVLENLNSLLKTCDNMMSVQIDVIRELSQVQLELMALNLQKLWRQE 344
            +N DNQY+IQ +  +  +N        +N  ++Q       S+ Q     +N+Q   +  
Sbjct: 1708 KNQDNQYNIQSKNQNNTQNSIQSKNQNNNQNTIQSRNQNMQSRNQ-NNNQINIQSKNQNN 1766

Query: 343  SQTNI--FNLDNDADSIINSLDSDSTKTITEKTLNTSCKNV 227
            +Q NI   N +N+ ++I +   +++   I  K  N +  N+
Sbjct: 1767 NQNNIQSKNQNNNQNNIQSKNQNNNQNNIQSKNQNNNQNNI 1807


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,342,979
Number of Sequences: 53049
Number of extensions: 558920
Number of successful extensions: 1690
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1690
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)