Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13k10
(245 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 26 0.80
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 25 1.4
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 1.4
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 23 4.3
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 23 5.6
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 23 5.6
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 23 5.6
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 23 5.6
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 23 5.6
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 23 5.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 23 5.6
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 23 5.6
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 23 5.6
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 23 5.6
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 23 5.6
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 23 5.6
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 23 7.4
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 23 7.4
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 22 9.8
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 22 9.8
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 22 9.8
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 0.80
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 165 KQHKDSTILSPNRISIYKYFQNESE 239
K KD+T+ SPN S +F+ S+
Sbjct: 14 KSEKDTTVNSPNASSFSSFFKKSSQ 38
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 165 LGLTE*TAVFFLYRPLYYSGCCYSRFLCVTQNKN 64
L L + +FLYR L YS+++ Q++N
Sbjct: 296 LSLVKFICDYFLYRKLSLKNLDYSKYITFVQDRN 329
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 132 EKKLLFTQLNPKQHKDSTILSPNRISIYK 218
++K+LF ++ H+ S I SPN YK
Sbjct: 186 QRKILFNAIDILSHEISLIASPNSKKKYK 214
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 23.4 bits (48), Expect = 4.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 156 LNPKQHKDSTILSPNRISIYKYFQNESEQI 245
LNPK + T L R+ + K +N EQ+
Sbjct: 171 LNPKSDPEITQLLSRRLKLEKEVRNLQEQL 200
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 81 RKGNANSNSHYSTRAYREKKLLFTQLNPKQHKDSTILSPNRISIYKYFQNE 233
R G+AN + +R E T+ PK +D++I N+ISI F+N+
Sbjct: 818 RPGSANHIADALSRIVDE-----TEPIPKDSEDNSINFVNQISITDDFKNQ 863
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 81 RKGNANSNSHYSTRAYREKKLLFTQLNPKQHKDSTILSPNRISIYKYFQNE 233
R G+AN + +R E T+ PK +D++I N+ISI F+N+
Sbjct: 818 RPGSANHIADALSRIVDE-----TEPIPKDSEDNSINFVNQISITDDFKNQ 863
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 81 RKGNANSNSHYSTRAYREKKLLFTQLNPKQHKDSTILSPNRISIYKYFQNE 233
R G+AN + +R E T+ PK +D++I N+ISI F+N+
Sbjct: 818 RPGSANHIADALSRIVDE-----TEPIPKDSEDNSINFVNQISITDDFKNQ 863
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 81 RKGNANSNSHYSTRAYREKKLLFTQLNPKQHKDSTILSPNRISIYKYFQNE 233
R G+AN + +R E T+ PK +D++I N+ISI F+N+
Sbjct: 818 RPGSANHIADALSRIVDE-----TEPIPKDSEDNSINFVNQISITDDFKNQ 863
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 81 RKGNANSNSHYSTRAYREKKLLFTQLNPKQHKDSTILSPNRISIYKYFQNE 233
R G+AN + +R E T+ PK +D++I N+ISI F+N+
Sbjct: 818 RPGSANHIADALSRIVDE-----TEPIPKDSEDNSINFVNQISITDDFKNQ 863
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 81 RKGNANSNSHYSTRAYREKKLLFTQLNPKQHKDSTILSPNRISIYKYFQNE 233
R G+AN + +R E T+ PK +D++I N+ISI F+N+
Sbjct: 818 RPGSANHIADALSRIVDE-----TEPIPKDSEDNSINFVNQISITDDFKNQ 863
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.0 bits (47), Expect = 5.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 67 KCPYSSAYANXRDSMKLFKKI 5
KC ++AN D+ K +KK+
Sbjct: 103 KCLAGFSFANETDAQKFYKKV 123
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 81 RKGNANSNSHYSTRAYREKKLLFTQLNPKQHKDSTILSPNRISIYKYFQNE 233
R G+AN + +R E T+ PK +D++I N+ISI F+N+
Sbjct: 818 RPGSANHIADALSRIVDE-----TEPIPKDSEDNSINFVNQISITDDFKNQ 863
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 81 RKGNANSNSHYSTRAYREKKLLFTQLNPKQHKDSTILSPNRISIYKYFQNE 233
R G+AN + +R E T+ PK +D++I N+ISI F+N+
Sbjct: 818 RPGSANHIADALSRIVDE-----TEPIPKDSEDNSINFVNQISITDDFKNQ 863
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 81 RKGNANSNSHYSTRAYREKKLLFTQLNPKQHKDSTILSPNRISIYKYFQNE 233
R G+AN + +R E T+ PK +D++I N+ISI F+N+
Sbjct: 818 RPGSANHIADALSRIVDE-----TEPIPKDSEDNSINFVNQISITDDFKNQ 863
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 81 RKGNANSNSHYSTRAYREKKLLFTQLNPKQHKDSTILSPNRISIYKYFQNE 233
R G+AN + +R E T+ PK +D++I N+ISI F+N+
Sbjct: 818 RPGSANHIADALSRIVDE-----TEPIPKDSEDNSINFVNQISITDDFKNQ 863
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 81 RKGNANSNSHYSTRAYREKKLLFTQLNPKQHKDSTILSPNRISIYKYFQNE 233
R G+AN + +R E T+ PK +D++I N+ISI F+N+
Sbjct: 818 RPGSANHIADALSRIVDE-----TEPIPKDSEDNSINFVNQISITDDFKNQ 863
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 144 AVFFLYRPLYYSG 106
+VFF YRP+ +SG
Sbjct: 88 SVFFGYRPIVFSG 100
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 204 FCSDLGLSNLCVVL 163
FC+ L L NLC VL
Sbjct: 278 FCAHLSLYNLCKVL 291
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 125 GPCTIVAVAIRVSFALRKIKMSILECLC 42
G TI+AV + K +L+CLC
Sbjct: 136 GYTTIIAVLLWGILVWNKCNPKLLDCLC 163
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 22.2 bits (45), Expect = 9.8
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = -3
Query: 132 LYRPLYYSGCCYSRFLCVTQNKN 64
LY + GCC+S+ + + + +N
Sbjct: 569 LYEMISQHGCCWSKIIHIQKLEN 591
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 22.2 bits (45), Expect = 9.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 127 IEKKNCCSLS*TQNNTKIRQS*VRTELAFISISKTNLS 240
+ +K S ++NT + S + +EL I I + NLS
Sbjct: 151 VTRKKAGSQPVEESNTSLDMSTISSELQNIRIQQMNLS 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 891,326
Number of Sequences: 5004
Number of extensions: 14621
Number of successful extensions: 35
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -