Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13k10
(245 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653... 28 1.2
04_04_1175 + 31482471-31482548,31483780-31483821,31483901-314839... 27 1.6
10_08_1027 - 22404169-22404807,22406148-22406360,22407062-224072... 27 2.1
02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,522... 27 2.1
12_01_0624 - 5137096-5137310,5137923-5138380,5138428-5140070,514... 27 2.8
10_08_0645 - 19562886-19564484 25 6.4
12_02_0925 - 24398851-24398998,24399478-24399718,24399886-244005... 25 8.5
12_02_0078 + 13290432-13290924,13290998-13291201,13291290-132920... 25 8.5
09_04_0256 + 16148820-16148998,16149547-16150241,16150317-161505... 25 8.5
07_03_1652 - 28409097-28409165,28409788-28409911,28410317-284105... 25 8.5
07_03_0014 - 12428713-12428860,12429340-12429580,12429664-124303... 25 8.5
06_01_1070 + 8750260-8750335,8750432-8751311,8753719-8754646 25 8.5
04_04_1138 - 31162440-31163488,31163910-31164164,31164386-311645... 25 8.5
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876... 25 8.5
03_01_0100 - 791425-792996 25 8.5
02_05_1149 + 34471730-34471790,34471975-34472056,34472605-344732... 25 8.5
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 25 8.5
01_01_1009 + 7992040-7992287,7992747-7993144,7993301-7993441,799... 25 8.5
01_01_0596 + 4435643-4436664,4437241-4437766 25 8.5
>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
24665465-24665887,24665960-24666252,24666332-24666605,
24666856-24667358,24667464-24667785,24667875-24668220,
24668339-24668997,24669524-24669625,24669656-24670052,
24670155-24670270,24670360-24670386
Length = 1704
Score = 27.9 bits (59), Expect = 1.2
Identities = 22/54 (40%), Positives = 29/54 (53%)
Frame = -1
Query: 212 NANSVRT*DCRIFVLFWV*LSEQQFFFSIGPCTIVAVAIRVSFALRKIKMSILE 51
N N +R RI W LSE FF S+G ++VAI V +LR++ M LE
Sbjct: 1052 NVNRIRLVWSRI----WKVLSE--FFVSVGLLENLSVAIFVMDSLRQLAMKFLE 1099
>04_04_1175 +
31482471-31482548,31483780-31483821,31483901-31483960,
31484280-31484286,31484783-31484955,31485288-31485364,
31485854-31485992,31486008-31486163,31486217-31486263,
31486992-31487052
Length = 279
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 132 LYRPLYYSGCCYSRFLCVTQNKNVH 58
+Y L YS CYS FLC ++ + H
Sbjct: 193 IYSNLPYSETCYSAFLCQVEHFSEH 217
>10_08_1027 -
22404169-22404807,22406148-22406360,22407062-22407255,
22407422-22407566,22407801-22407875,22408222-22408380,
22408466-22408645,22408756-22409243,22409375-22409738,
22409811-22409943,22410023-22410153,22410247-22410354,
22410451-22410897,22411425-22411514,22411607-22411915,
22412209-22412320,22412488-22412699
Length = 1332
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 89 SFALRKIKMSILECLC 42
S+ LRK KM ++ECLC
Sbjct: 415 SYTLRKSKMLLVECLC 430
>02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,
5222445-5222793,5223189-5223510,5223621-5224123,
5224486-5224578,5224708-5224759,5224837-5225129,
5225208-5225630,5225734-5226070,5226185-5226220,
5226272-5226589,5227465-5228450
Length = 1637
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -1
Query: 164 WV*LSEQQFFFSIGPCTIVAVAIRVSFALRKIKMSILE 51
W LS+ FF S+G ++VAI V +LR++ M LE
Sbjct: 1029 WKVLSD--FFVSVGSSENLSVAIFVMDSLRQLAMKFLE 1064
>12_01_0624 -
5137096-5137310,5137923-5138380,5138428-5140070,
5140245-5140462,5140589-5140757,5141249-5141305
Length = 919
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -1
Query: 149 EQQFFFSIGPCTIVAVAIRVSFALRKIK 66
E++ + +GP TIV ++ +A+ K+K
Sbjct: 7 ERKIWIEMGPITIVVSTLKYEYAIEKLK 34
>10_08_0645 - 19562886-19564484
Length = 532
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 132 EKKLLFTQLNPKQHKDSTILSPNRISIYKYF 224
E+ ++FT K D IL P R+ ++ +F
Sbjct: 333 ERVMVFTMSGDKDGVDPAILRPGRLDVHIHF 363
>12_02_0925 -
24398851-24398998,24399478-24399718,24399886-24400536,
24400625-24400828,24400902-24401583,24401678-24401934,
24402010-24402704,24403150-24403397
Length = 1041
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 85 LRYAK*KCPYSSAYANXRDSMKLFKKI 5
LRY K Y S +AN RD + + +I
Sbjct: 585 LRYQLLKMEYDSLFANQRDKFEAYMEI 611
>12_02_0078 +
13290432-13290924,13290998-13291201,13291290-13292024,
13292108-13292499
Length = 607
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 85 LRYAK*KCPYSSAYANXRDSMKLFKKI 5
LRY K Y S +AN RD + + +I
Sbjct: 122 LRYQLLKMEYGSIFANQRDKFEAYMEI 148
>09_04_0256 +
16148820-16148998,16149547-16150241,16150317-16150573,
16150668-16151349,16151423-16151626,16151715-16152449,
16152533-16152698,16153253-16153400
Length = 1021
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 85 LRYAK*KCPYSSAYANXRDSMKLFKKI 5
LRY K Y S +AN RD + + +I
Sbjct: 562 LRYQLLKMEYDSLFANQRDKFEAYMEI 588
>07_03_1652 -
28409097-28409165,28409788-28409911,28410317-28410557,
28410641-28411375,28411464-28411667,28411741-28412422,
28412517-28412773,28412849-28413543,28414003-28414250
Length = 1084
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 85 LRYAK*KCPYSSAYANXRDSMKLFKKI 5
LRY K Y S +AN RD + + +I
Sbjct: 585 LRYQLLKMEYDSLFANQRDKFEAYMEI 611
>07_03_0014 -
12428713-12428860,12429340-12429580,12429664-12430398,
12430487-12430690,12430764-12431445,12431540-12431796,
12431872-12432566,12433012-12433172,12434039-12434383,
12434399-12434631,12434656-12434740
Length = 1261
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 85 LRYAK*KCPYSSAYANXRDSMKLFKKI 5
LRY K Y S +AN RD + + +I
Sbjct: 777 LRYQLLKMEYDSLFANQRDKFEAYMEI 803
>06_01_1070 + 8750260-8750335,8750432-8751311,8753719-8754646
Length = 627
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 192 LGLSNLCVVLGLTE*TAVFFLYRPLYYSGCCYSRFLCVTQNKNVHTRVP 46
LG+ C+ + + A + LYR L+ SG ++R V RVP
Sbjct: 239 LGVPTFCMAVSVVAFVAGYPLYRRLHPSGSPFTRLAQVVVAAVRKRRVP 287
>04_04_1138 -
31162440-31163488,31163910-31164164,31164386-31164500,
31164523-31164579,31164580-31164632,31164721-31164981,
31165243-31165293,31165395-31165430,31165815-31166040,
31166082-31166132,31166346-31166465
Length = 757
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 156 LNPKQHKDSTILSPNRISIYKYFQNES 236
LN ++K S + + N + IY+YFQ +
Sbjct: 207 LNIHKYKGSVLKAYNPVYIYRYFQRRN 233
>03_03_0039 -
13986844-13986907,13987219-13987273,13987492-13987606,
13987652-13987774,13987962-13988015,13988352-13988411,
13988522-13988584,13988790-13988863,13989177-13989261,
13989376-13989456,13989764-13989856,13990275-13990339,
13990407-13990482,13990570-13990635,13991094-13991153,
13991233-13991322,13991755-13991817,13992502-13992625,
13993031-13993271,13993355-13993624,13993715-13994089,
13994178-13994381,13994455-13995136,13995231-13995279,
13995362-13995488,13995564-13996258,13996718-13996965
Length = 1433
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 85 LRYAK*KCPYSSAYANXRDSMKLFKKI 5
LRY K Y S +AN RD + + +I
Sbjct: 558 LRYQLLKMEYDSLFANQRDKFEAYMEI 584
>03_01_0100 - 791425-792996
Length = 523
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +3
Query: 132 EKKLLFTQLNPKQHKDSTILSPNRISIYKYF 224
E+ ++FT K+ D+ ++ P R+ ++ +F
Sbjct: 323 ERVMVFTMRGGKEGVDAAVVRPGRLDVHIHF 353
>02_05_1149 +
34471730-34471790,34471975-34472056,34472605-34473299,
34473375-34473631,34473726-34474407,34474481-34474684,
34474773-34474903,34475068-34475263,34475347-34475587,
34476067-34476214
Length = 898
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 85 LRYAK*KCPYSSAYANXRDSMKLFKKI 5
LRY K Y S +AN RD + + +I
Sbjct: 550 LRYQLLKMEYDSLFANQRDKFEAYMEI 576
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 85 LRYAK*KCPYSSAYANXRDSMKLFKKI 5
LRY K Y S +AN RD + + +I
Sbjct: 1918 LRYQLLKMEYDSLFANQRDKFEAYMEI 1944
>01_01_1009 +
7992040-7992287,7992747-7993144,7993301-7993441,
7993517-7993773,7993868-7994169,7994342-7994580,
7994654-7994857,7994946-7995680,7995764-7996155
Length = 971
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 85 LRYAK*KCPYSSAYANXRDSMKLFKKI 5
LRY K Y S +AN RD + + +I
Sbjct: 486 LRYQLLKMEYDSLFANQRDKFEAYMEI 512
>01_01_0596 + 4435643-4436664,4437241-4437766
Length = 515
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 96 SRFLCVTQNKNVHTRVPMLIXV 31
S+FLCV + KN R+P + +
Sbjct: 61 SKFLCVPERKNQTIRLPSTVTI 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,968,077
Number of Sequences: 37544
Number of extensions: 72962
Number of successful extensions: 147
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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