Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k10
         (245 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-19|CAB55031.1|  269|Caenorhabditis elegans Hypothetical...    27   2.3  
Z83109-3|CAB05515.2|  300|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z49967-12|CAI70401.1|  396|Caenorhabditis elegans Hypothetical p...    26   4.1  
Z49967-11|CAA90252.1|  442|Caenorhabditis elegans Hypothetical p...    26   4.1  
Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical p...    25   5.4  
Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical p...    25   5.4  
AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    25   7.1  
Z66512-8|CAA91324.2|  349|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U97013-2|AAV58868.1|  190|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U97013-1|AAB52340.2|  270|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AJ745072-1|CAG32978.1|  400|Caenorhabditis elegans alpha1,3-fuco...    25   9.4  
AF003386-15|AAB54261.2|  400|Caenorhabditis elegans Fucosyl tran...    25   9.4  

>AL117195-19|CAB55031.1|  269|Caenorhabditis elegans Hypothetical
           protein Y57A10A.26 protein.
          Length = 269

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 96  NSNSHYSTRAYREKKLLFTQLNPKQHKDSTILSPN 200
           N N+ +   + R + + F +LN +QH DSTI+  N
Sbjct: 50  NINNEFKKMSARGQ-IPFIELNGRQHADSTIIIDN 83


>Z83109-3|CAB05515.2|  300|Caenorhabditis elegans Hypothetical
           protein F44G3.5 protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 6   IFLNNFILSRLLA*ALEYGHFY 71
           +F+N+F++S LL     Y HFY
Sbjct: 214 LFINSFVVSLLLTTNYIYNHFY 235


>Z49967-12|CAI70401.1|  396|Caenorhabditis elegans Hypothetical
           protein F54C9.6b protein.
          Length = 396

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 123 AYREKKLLFTQLNPKQHKDSTILSPNRISIYKYFQNESE 239
           A  E++L F   N  +  D  ++ P R+   +YF N ++
Sbjct: 294 ACAEERLTFMTTNYVERLDPALIRPGRVDRKQYFGNATD 332


>Z49967-11|CAA90252.1|  442|Caenorhabditis elegans Hypothetical
           protein F54C9.6a protein.
          Length = 442

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 123 AYREKKLLFTQLNPKQHKDSTILSPNRISIYKYFQNESE 239
           A  E++L F   N  +  D  ++ P R+   +YF N ++
Sbjct: 340 ACAEERLTFMTTNYVERLDPALIRPGRVDRKQYFGNATD 378


>Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical
           protein C41C4.5b protein.
          Length = 887

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 69  YFA*RKGNANSNSHYSTRAYREKKLLFTQLNPKQHKDSTILSPNRI-SIYKYFQNESEQ 242
           Y   RKG+ ++ SH+S   +R  ++    L+      S  LS   I SI     N S +
Sbjct: 723 YVRKRKGSISAQSHHSVPVHRASRVSLNTLHKSSTTQSVKLSVMDIRSIKSIHSNHSSK 781


>Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical
           protein C41C4.5a protein.
          Length = 849

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 69  YFA*RKGNANSNSHYSTRAYREKKLLFTQLNPKQHKDSTILSPNRI-SIYKYFQNESEQ 242
           Y   RKG+ ++ SH+S   +R  ++    L+      S  LS   I SI     N S +
Sbjct: 685 YVRKRKGSISAQSHHSVPVHRASRVSLNTLHKSSTTQSVKLSVMDIRSIKSIHSNHSSK 743


>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 240 AQIRFGNTYKC*FCSDLGLSNLC 172
           A+  + N YKC  C+D  L   C
Sbjct: 457 AECNWNNRYKCTICADYDLCRQC 479


>Z66512-8|CAA91324.2|  349|Caenorhabditis elegans Hypothetical
           protein F52H3.4 protein.
          Length = 349

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 155 VKPKTTQRFDNPKSE 199
           VK KTT RF  PKSE
Sbjct: 85  VKEKTTTRFIKPKSE 99


>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
           protein B0393.5 protein.
          Length = 1106

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 15  NNFILSRLLA*ALEYGHFYFA*RKGNANSNSHYSTR 122
           N F L+ ++  ++ + HF ++    N N+ + +STR
Sbjct: 105 NTFQLALIIGDSMTFAHFIYSKLNFNTNAIAGFSTR 140


>U97013-2|AAV58868.1|  190|Caenorhabditis elegans Hypothetical
           protein F28H1.4b protein.
          Length = 190

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 210 C*FCSDLG--LSNLCVVLGLTE*TAVFFLYRPLYYSGCCYSRFL 85
           C +   LG  +  +C+VL L   T +F +  P YY+G  ++ F+
Sbjct: 36  CEYIRTLGGIMKIVCIVLCLL--TFIFVMMGPAYYTGVGWATFV 77


>U97013-1|AAB52340.2|  270|Caenorhabditis elegans Hypothetical
           protein F28H1.4a protein.
          Length = 270

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 210 C*FCSDLG--LSNLCVVLGLTE*TAVFFLYRPLYYSGCCYSRFL 85
           C +   LG  +  +C+VL L   T +F +  P YY+G  ++ F+
Sbjct: 116 CEYIRTLGGIMKIVCIVLCLL--TFIFVMMGPAYYTGVGWATFV 157


>AJ745072-1|CAG32978.1|  400|Caenorhabditis elegans
           alpha1,3-fucosyltransferase homologueprotein.
          Length = 400

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +3

Query: 27  LSRLLA*ALEYGHFYFA*RKGNANSNSHYSTRAYREKKLLFTQLNPKQHKDSTILSPNRI 206
           L  L A +  YG  YF  R+    +++ ++   YR       +L  K   + T +  +  
Sbjct: 318 LRSLEANSTAYGE-YFEWRQKGLWTSAPWNAPGYRNGLCRVCELLWKAKDNETEVYKSYD 376

Query: 207 SIYKYFQNESE 239
           +I+K+F NES+
Sbjct: 377 NIWKWFDNESQ 387


>AF003386-15|AAB54261.2|  400|Caenorhabditis elegans Fucosyl
           transferase protein 3 protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +3

Query: 27  LSRLLA*ALEYGHFYFA*RKGNANSNSHYSTRAYREKKLLFTQLNPKQHKDSTILSPNRI 206
           L  L A +  YG  YF  R+    +++ ++   YR       +L  K   + T +  +  
Sbjct: 318 LRSLEANSTAYGE-YFEWRQKGLWTSAPWNAPGYRNGLCRVCELLWKAKDNETEVYKSYD 376

Query: 207 SIYKYFQNESE 239
           +I+K+F NES+
Sbjct: 377 NIWKWFDNESQ 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,843,873
Number of Sequences: 27780
Number of extensions: 79204
Number of successful extensions: 181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)