Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k10
         (245 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   3.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   3.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   3.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   3.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    20   3.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   3.9  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   5.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   6.9  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 204 FCSDLGLSNLCVVLGLT 154
           FC D G   +  VLG T
Sbjct: 77  FCQDSGYDKILQVLGAT 93


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 186 LSNLCVVLGLTE*TAVFFLYRPLYY 112
           ++ LCV + L+    +  LY P  Y
Sbjct: 737 ITTLCVAISLSATVTLVCLYSPKIY 761


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 204 FCSDLGLSNLCVVLGLT 154
           FC D G   +  VLG T
Sbjct: 77  FCQDSGYDKILQVLGAT 93


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 186 LSNLCVVLGLTE*TAVFFLYRPLYY 112
           ++ LCV + L+    +  LY P  Y
Sbjct: 827 ITTLCVAISLSATVTLVCLYSPKIY 851


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 149 HSVKPKTTQRFDNPKSEQN 205
           H +    T++F NP+ E+N
Sbjct: 276 HGLYYVDTEQFSNPQYEEN 294


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 125 GPCTIVAVAIRVSFALRK 72
           GPC ++ V   VSF L +
Sbjct: 222 GPCVLLVVLSWVSFWLNR 239


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 19.8 bits (39), Expect = 5.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 64  CPYSSAYANXRDSMKLFKKI 5
           C YS+ Y N  +  KL+  I
Sbjct: 311 CNYSNNYYNNNNYKKLYYNI 330


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 168 QHKDSTILSPNR 203
           Q  DSTILSP R
Sbjct: 800 QVNDSTILSPVR 811


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,195
Number of Sequences: 438
Number of extensions: 1193
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)