Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13k08
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 2.4
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 3.2
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 27 3.2
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 4.2
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 5.5
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 26 7.3
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 26 7.3
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 26 7.3
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 26 7.3
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 9.6
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 7 GI*IFSSKWCCCFWRSTGLG 66
G+ + +WC FW S+GLG
Sbjct: 2214 GLGLICPRWCLEFWSSSGLG 2233
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 201 MAYVPRPNLALVDEEKSIS-GMRNTSATWQLTRARKLRLPKL 79
+ + +P + L D SIS G RNT+ + KLRL +L
Sbjct: 2901 VGFTTKPLVGLFDFASSISEGARNTTTVFDERHIEKLRLSRL 2942
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 735 LLSQQSDLYNSIRGSVQNQSRDLGGQETLLLNMVRARKVQDVEA 604
LL +SDLY+ G V+ R GG L+ +KV D A
Sbjct: 399 LLLVKSDLYSINHGQVEMNPRRFGGTAPLVKLGAHFKKVADFSA 442
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -1
Query: 468 DMDIPSILAFTANTTQPVQLKMPVGQQSNILKREE 364
D+ +P T++PV+L+ P+ + SN+ + E+
Sbjct: 716 DVVVPDTTDEEVITSEPVKLEQPINENSNVEEAEK 750
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 384 NILKREELLRWSIRKAICPVC 322
++ R+ LL+W ++ICPVC
Sbjct: 649 HLYHRQCLLQWMETRSICPVC 669
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 267 KRNTANEIPTIIAPARLRSSINMAYVPRPNLALVDEEKSISG 142
KRN N +PT+I PA R + + + V + + + ++SG
Sbjct: 82 KRNQ-NLVPTVIIPASPRDNASKSVVSKKEVVNLSSSVALSG 122
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 7.3
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = -1
Query: 192 VPRPNLALVDEEKSISGMRNTSATWQLTRARKLRLPKLK---IPSPEASAPPKATAPLAR 22
+P +A + EK +S + + R KL+ KLK I + PKA +P+A
Sbjct: 201 IPHATIARLQHEKPLSKEKADKLITRHNRKLKLKKRKLKELGITLESDVSHPKAASPVAS 260
Query: 21 K 19
K
Sbjct: 261 K 261
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Frame = +1
Query: 103 CPRQLPCRTCVTHPANALLFV---HQSQIRTRNISH 201
C C C+THP NA H S + ISH
Sbjct: 330 CGDNCECLGCLTHPNNATTLAALNHISALEKETISH 365
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 390 QSNILKREELLRWSIRKAICPVCSQKWRDRSSITS 286
Q NI+K + L+R + P+C WR++ + S
Sbjct: 277 QKNIMKEDPLIRNDYEPQLLPIC---WRNKLNFNS 308
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 183 PNLALVDEEKSISGMRNTSATWQLTRARKLRLPKLKIPSPEASAPPK 43
P +L DE S G A +++R PKLK+ + + +AP K
Sbjct: 990 PQESLEDEILSAEGFSEVEAANKISRFEPFSSPKLKLATSD-NAPEK 1035
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,101,150
Number of Sequences: 5004
Number of extensions: 61374
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -