Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13k08
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0973 - 8193002-8193261,8193388-8193485,8194117-8194401,819... 31 1.4
02_05_0440 - 29035974-29036356,29037977-29038133,29038260-290388... 30 1.9
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 30 2.5
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876... 30 2.5
08_02_0538 - 18321101-18321128,18321767-18322587 29 3.3
03_06_0528 - 34526038-34526164,34526250-34526500,34526584-345268... 29 3.3
01_05_0769 - 25042022-25042447,25042856-25043234,25043714-250437... 29 4.4
10_08_0925 + 21604871-21605021,21605562-21605881,21606899-216078... 29 5.8
05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566... 28 7.6
04_04_1607 + 34750114-34750193,34750472-34750622,34750730-347507... 28 7.6
>07_01_0973 -
8193002-8193261,8193388-8193485,8194117-8194401,
8195559-8195773,8196549-8197058
Length = 455
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -1
Query: 195 YVPRPNLALVDEEKSISGMRNTSATWQLTRARKLRLPKLKIPSPEASAPPKATAPLAR-K 19
+V R + L+ +++ + G R S + A + K +PSP PP A A AR K
Sbjct: 45 HVRRQQMLLLQQQQLLQGQRPPSLSPSPATAPRAARQK-PLPSPSPPPPPPAPAEAARQK 103
Query: 18 DLDARV 1
+++ RV
Sbjct: 104 EVERRV 109
>02_05_0440 -
29035974-29036356,29037977-29038133,29038260-29038824,
29038866-29039191
Length = 476
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 67 RWNLQFRKTKFPCPRQLPCRTCVTHPANA 153
+W + R+ P PRQ PC C T P+ A
Sbjct: 42 QWRISARRN--PLPRQFPCSRCPTGPSTA 68
>09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -1
Query: 306 DRSSITSIKYSGLKRNTANEIPTIIAPARLRSSINMAYVPRPNLALVDEEKS 151
D+ T +K SG+ + NE PT+I+P + + A + R LA+ D+ S
Sbjct: 1582 DKQLETWVKASGILGGSKNEAPTVISPVQYKKRFRKA-MSRYFLAVPDDWSS 1632
>03_03_0039 - 13986844-13986907,13987219-13987273,13987492-13987606,
13987652-13987774,13987962-13988015,13988352-13988411,
13988522-13988584,13988790-13988863,13989177-13989261,
13989376-13989456,13989764-13989856,13990275-13990339,
13990407-13990482,13990570-13990635,13991094-13991153,
13991233-13991322,13991755-13991817,13992502-13992625,
13993031-13993271,13993355-13993624,13993715-13994089,
13994178-13994381,13994455-13995136,13995231-13995279,
13995362-13995488,13995564-13996258,13996718-13996965
Length = 1433
Score = 29.9 bits (64), Expect = 2.5
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +2
Query: 17 SFLASGAVAFGGALASG-DGIFSLGRRSFLARVNCHVALVLRIPLMLFSSSTKARLGRGT 193
S++ S A F G L + GIF +G SFL+ ++IPL LF + R GR
Sbjct: 1225 SYIFSSA-GFSGKLGTTLIGIFQVGFMSFLS---------MKIPLTLFGALLMDRSGRRA 1274
Query: 194 *AILIEDLNLAGAIIVGISFAVFLLRPEYLMLV 292
++ G + G+SF F + Y LV
Sbjct: 1275 LLLVSASGTFLGCFLTGLSF-YFKAQGVYAQLV 1306
>08_02_0538 - 18321101-18321128,18321767-18322587
Length = 282
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 747 RMISLLSQQSDLYNSIRGSVQNQSRDLGGQETLLLNMVRARK 622
++ SLL + L +RG V+ +L G + LL+ +V K
Sbjct: 19 KLASLLDDEYTLLREVRGDVEFLQAELSGMDDLLVRLVEMEK 60
>03_06_0528 -
34526038-34526164,34526250-34526500,34526584-34526804,
34526963-34527017
Length = 217
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 180 NLALVDEEKSISGMRNTSATWQLTRARKLRLPKLKIPSPEASAPPKA-TAPLARKDLDAR 4
N ++ +EK + MRN S T + A R + + PS S+ P A T+PLA A
Sbjct: 9 NSPVLGDEKKVRLMRNRSLTREEVDAFWRRQQRKQPPSSSTSSEPNATTSPLASPRAAAN 68
Query: 3 V 1
V
Sbjct: 69 V 69
>01_05_0769 -
25042022-25042447,25042856-25043234,25043714-25043763,
25044222-25044442,25045085-25045385
Length = 458
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -2
Query: 203 IWLMFLVLIWLWWTKRRALAGCVTQVRHGN 114
+WL L W WWT RR Q GN
Sbjct: 25 LWLAVSTLEWAWWTPRRLERALRAQGIRGN 54
>10_08_0925 +
21604871-21605021,21605562-21605881,21606899-21607897,
21608085-21608126,21608190-21608249,21608915-21608959
Length = 538
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 152 LFSSSTKARLGRGT*AILIEDLNLAGAIIVGISFAVFLLRPEYLMLVIEL 301
LF+SS R GR T ++ + +AG++ G + VF+L ++L I L
Sbjct: 103 LFASSVTRRYGRRTSMLIGGTVFIAGSVFGGAAVNVFMLLINRILLGIGL 152
>05_04_0376 -
20754386-20755392,20755683-20756320,20756433-20756627,
20757730-20757795,20757942-20758007,20758402-20758445
Length = 671
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 52 STGLGRWNLQFRKTKFPCPRQLPCRTCVTHPANALLF 162
S G + ++ F FP P PC+ V H NA L+
Sbjct: 273 SKGNQKVHVLFVTDCFPIPNLFPCKNLVKHEGNAWLY 309
>04_04_1607 +
34750114-34750193,34750472-34750622,34750730-34750796,
34750905-34751142,34751903-34752113
Length = 248
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -1
Query: 339 AICPVCSQKWRDRSSITSIKYSGLKRNTANEIPTIIAPARLRSSINMAYVPRPNL 175
A+C C ++WR RS LKR + ++ + R I+MA + R NL
Sbjct: 170 AMCMKCYRQWRSRSQSCPFCRDSLKRVNSGDLWMLTDD---RDVIDMATITRENL 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,789,409
Number of Sequences: 37544
Number of extensions: 419894
Number of successful extensions: 1391
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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