Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k08
         (810 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68193-3|CAI43243.1|  410|Homo sapiens chromosome X open reading...    30   8.6  
Z46936-2|CAI41959.1|  410|Homo sapiens testis expressed 28 protein.    30   8.6  
U93720-1|AAB71379.1|  410|Homo sapiens TEX28 protein.                  30   8.6  
BC026183-1|AAH26183.1|  410|Homo sapiens TEX28 protein protein.        30   8.6  

>Z68193-3|CAI43243.1|  410|Homo sapiens chromosome X open reading
           frame 2B protein.
          Length = 410

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 222 RLRSSINMAYVPRPNLALVDEEKSISGMRNTSATWQLTRARKLRLPKLKI 73
           RL+  +N  Y  + NLA  +E  +          W++T   K R+ KL++
Sbjct: 258 RLQGQLNEIYNLKHNLACSEERMAYLSYERAKEIWEITETFKSRISKLEM 307


>Z46936-2|CAI41959.1|  410|Homo sapiens testis expressed 28 protein.
          Length = 410

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 222 RLRSSINMAYVPRPNLALVDEEKSISGMRNTSATWQLTRARKLRLPKLKI 73
           RL+  +N  Y  + NLA  +E  +          W++T   K R+ KL++
Sbjct: 258 RLQGQLNEIYNLKHNLACSEERMAYLSYERAKEIWEITETFKSRISKLEM 307


>U93720-1|AAB71379.1|  410|Homo sapiens TEX28 protein.
          Length = 410

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 222 RLRSSINMAYVPRPNLALVDEEKSISGMRNTSATWQLTRARKLRLPKLKI 73
           RL+  +N  Y  + NLA  +E  +          W++T   K R+ KL++
Sbjct: 258 RLQGQLNEIYNLKHNLACSEERMAYLSYERAKEIWEITETFKSRISKLEM 307


>BC026183-1|AAH26183.1|  410|Homo sapiens TEX28 protein protein.
          Length = 410

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 222 RLRSSINMAYVPRPNLALVDEEKSISGMRNTSATWQLTRARKLRLPKLKI 73
           RL+  +N  Y  + NLA  +E  +          W++T   K R+ KL++
Sbjct: 258 RLQGQLNEIYNLKHNLACSEERMAYLSYERAKEIWEITETFKSRISKLEM 307


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,390,892
Number of Sequences: 237096
Number of extensions: 2246513
Number of successful extensions: 5714
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5713
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)