Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13k08
(810 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT021383-1|AAX33531.1| 1117|Drosophila melanogaster LD37257p pro... 34 0.20
AY061106-1|AAL28654.1| 1177|Drosophila melanogaster LD09503p pro... 34 0.20
AE014296-2728|AAF49469.2| 1117|Drosophila melanogaster CG4877-PB... 34 0.20
AE014296-2727|AAF49470.3| 1117|Drosophila melanogaster CG4877-PA... 34 0.20
AY060858-1|AAL28406.1| 607|Drosophila melanogaster GM03282p pro... 32 1.1
AE014134-533|AAF51166.1| 607|Drosophila melanogaster CG17265-PA... 32 1.1
BT003642-1|AAO39646.1| 1324|Drosophila melanogaster AT15782p pro... 31 1.9
AE013599-3664|AAF47046.2| 1324|Drosophila melanogaster CG30183-P... 31 1.9
>BT021383-1|AAX33531.1| 1117|Drosophila melanogaster LD37257p
protein.
Length = 1117
Score = 34.3 bits (75), Expect = 0.20
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 13/145 (8%)
Frame = -1
Query: 420 PVQLKMPVGQQSNILKREELLRWSIRKAICPVCSQKWRDRSSITS---------IKYSGL 268
P+ L+MP +N L+R++ + S + P + K D S+ + I Y
Sbjct: 335 PLNLRMPTTPSTNPLQRQQAFKLSTPYTLAPPTAAKQADTYSLNTPPPTATQMQISYPNE 394
Query: 267 K-RNTANEIPTIIAPARLRSSINMAYVPRPNLA-LVDEEKSISGMRNTSATWQLTRARKL 94
K N T S + +Y P +A L S + Q+ R +
Sbjct: 395 KLSNNMKANATFSIQQTALSQVAASYAAAPQVAALAQRAPSQVAPLQQAPVQQMHFPRSV 454
Query: 93 RLPKLKIPSPEASAPPK--ATAPLA 25
P ++P P+ APP+ ATAP A
Sbjct: 455 --PPQQLPPPQQRAPPQQLATAPFA 477
>AY061106-1|AAL28654.1| 1177|Drosophila melanogaster LD09503p
protein.
Length = 1177
Score = 34.3 bits (75), Expect = 0.20
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 13/145 (8%)
Frame = -1
Query: 420 PVQLKMPVGQQSNILKREELLRWSIRKAICPVCSQKWRDRSSITS---------IKYSGL 268
P+ L+MP +N L+R++ + S + P + K D S+ + I Y
Sbjct: 335 PLNLRMPTTPSTNPLQRQQAFKLSTPYTLAPPTAAKQADTYSLNTPPPTATQMQISYPNE 394
Query: 267 K-RNTANEIPTIIAPARLRSSINMAYVPRPNLA-LVDEEKSISGMRNTSATWQLTRARKL 94
K N T S + +Y P +A L S + Q+ R +
Sbjct: 395 KLSNNMKANATFSIQQTALSQVAASYAAAPQVAALAQRAPSQVAPLQQAPVQQMHFPRSV 454
Query: 93 RLPKLKIPSPEASAPPK--ATAPLA 25
P ++P P+ APP+ ATAP A
Sbjct: 455 --PPQQLPPPQQRAPPQQLATAPFA 477
>AE014296-2728|AAF49469.2| 1117|Drosophila melanogaster CG4877-PB,
isoform B protein.
Length = 1117
Score = 34.3 bits (75), Expect = 0.20
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 13/145 (8%)
Frame = -1
Query: 420 PVQLKMPVGQQSNILKREELLRWSIRKAICPVCSQKWRDRSSITS---------IKYSGL 268
P+ L+MP +N L+R++ + S + P + K D S+ + I Y
Sbjct: 335 PLNLRMPTTPSTNPLQRQQAFKLSTPYTLAPPTAAKQADTYSLNTPPPTATQMQISYPNE 394
Query: 267 K-RNTANEIPTIIAPARLRSSINMAYVPRPNLA-LVDEEKSISGMRNTSATWQLTRARKL 94
K N T S + +Y P +A L S + Q+ R +
Sbjct: 395 KLSNNMKANATFSIQQTALSQVAASYAAAPQVAALAQRAPSQVAPLQQAPVQQMHFPRSV 454
Query: 93 RLPKLKIPSPEASAPPK--ATAPLA 25
P ++P P+ APP+ ATAP A
Sbjct: 455 --PPQQLPPPQQRAPPQQLATAPFA 477
>AE014296-2727|AAF49470.3| 1117|Drosophila melanogaster CG4877-PA,
isoform A protein.
Length = 1117
Score = 34.3 bits (75), Expect = 0.20
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 13/145 (8%)
Frame = -1
Query: 420 PVQLKMPVGQQSNILKREELLRWSIRKAICPVCSQKWRDRSSITS---------IKYSGL 268
P+ L+MP +N L+R++ + S + P + K D S+ + I Y
Sbjct: 335 PLNLRMPTTPSTNPLQRQQAFKLSTPYTLAPPTAAKQADTYSLNTPPPTATQMQISYPNE 394
Query: 267 K-RNTANEIPTIIAPARLRSSINMAYVPRPNLA-LVDEEKSISGMRNTSATWQLTRARKL 94
K N T S + +Y P +A L S + Q+ R +
Sbjct: 395 KLSNNMKANATFSIQQTALSQVAASYAAAPQVAALAQRAPSQVAPLQQAPVQQMHFPRSV 454
Query: 93 RLPKLKIPSPEASAPPK--ATAPLA 25
P ++P P+ APP+ ATAP A
Sbjct: 455 --PPQQLPPPQQRAPPQQLATAPFA 477
>AY060858-1|AAL28406.1| 607|Drosophila melanogaster GM03282p
protein.
Length = 607
Score = 31.9 bits (69), Expect = 1.1
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 162 EEKSISGMRNTSATWQL-TRARKLRLPKLKIPSPEASAPPKATAP 31
E +++G + S +QL + + LR P+LK P+P S PP+ P
Sbjct: 148 ELPNLAGQQRRSFHYQLQNQQQSLRSPQLKAPAPAHSIPPRYQPP 192
>AE014134-533|AAF51166.1| 607|Drosophila melanogaster CG17265-PA
protein.
Length = 607
Score = 31.9 bits (69), Expect = 1.1
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 162 EEKSISGMRNTSATWQL-TRARKLRLPKLKIPSPEASAPPKATAP 31
E +++G + S +QL + + LR P+LK P+P S PP+ P
Sbjct: 150 ELPNLAGQQRRSFHYQLQNQQQSLRSPQLKAPAPAHSIPPRYQPP 194
>BT003642-1|AAO39646.1| 1324|Drosophila melanogaster AT15782p
protein.
Length = 1324
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Frame = -1
Query: 147 SGMRNTSATWQLTRARKLRLPKLKIPSP----------EASAPPKATAPLARKDL 13
SG ++ + Q T + +R PKLK+PSP E +PPK L+R +L
Sbjct: 682 SGTESSCSASQTTESSVIRQPKLKLPSPHAHQSLNNISEQHSPPKQNRNLSRSEL 736
>AE013599-3664|AAF47046.2| 1324|Drosophila melanogaster CG30183-PA
protein.
Length = 1324
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Frame = -1
Query: 147 SGMRNTSATWQLTRARKLRLPKLKIPSP----------EASAPPKATAPLARKDL 13
SG ++ + Q T + +R PKLK+PSP E +PPK L+R +L
Sbjct: 682 SGTESSCSASQTTESSVIRQPKLKLPSPHAHQSLNNISEQHSPPKQNRNLSRSEL 736
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,121,220
Number of Sequences: 53049
Number of extensions: 701429
Number of successful extensions: 2045
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2042
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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