Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k07
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.8  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    27   4.3  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.6  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   7.5  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   9.9  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.9  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 693 LMFFFYIFKYFLH*SIIFNFILLNSQFFFI 782
           L+ FF+   +FL  S  F+F+   SQ F +
Sbjct: 116 LLLFFFFLLFFLSFSFSFSFLFFLSQIFIV 145


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 318 FETPVASQNITNRVFHENSINFVKCLKKYSNNF 220
           F  P+AS N    +   NS ++++ LKK   NF
Sbjct: 169 FGYPIASSNTNGLINENNSKSWIQYLKKNGANF 201


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +1

Query: 598 SYRCKLVTTNQYSTILQHFTFKQNFSCMF 684
           S+  KL++ +  ST+ +H+ +   ++C+F
Sbjct: 400 SFAEKLISQSDESTLCKHYVYASLYACLF 428


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -2

Query: 480 IHHFSQLINTTECLKNYEGPNEYVH 406
           +HH S+ +N ++  +  +G  +Y+H
Sbjct: 453 LHHLSEYLNVSKLARKVDGYTKYMH 477


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 421 KRICPPLKLVITKKNTSYLSEDLTFLR*LKQ 329
           ++I   LK ++T+   SY+SED   LR L +
Sbjct: 610 EKIFSKLKHLLTRTRDSYISEDTKILRLLNR 640


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -2

Query: 708 KKKTSMSIKHTTEVLF---ECKMLEDGGILISCYKFTAVRLVHSFAI 577
           KK+ ++S     + L    E   L D  ++  C+ F A  L HS A+
Sbjct: 447 KKRKTLSESQAGDTLMSSEESHQLYDSDVMDCCFSFLASILTHSIAL 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,209,167
Number of Sequences: 5004
Number of extensions: 63953
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)