Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k06
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   2.6  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    27   2.6  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    26   5.9  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   7.8  

>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 232 SAFKTVILNAKVHCKLNYQHLFPME--PCEFYNLHGCIRNFVNLG 104
           S+F++ I NA+    ++ Q+   +E  PC  +N+ GC   F  LG
Sbjct: 364 SSFQSKIRNAEDEDVMDSQYGSKIEDTPCSLHNVPGCFSCFDRLG 408


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 575 QRLIKHLKIVYANLIF*ISEY*LVSYVPTSD 667
           Q + + LK  Y N+I  I +Y ++SY+  SD
Sbjct: 325 QHMFQRLKEGYRNIIIAIVDYGVISYIRLSD 355


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 330 QWSHPVTAFLTKPPISFLTKFISAIPP 410
           +W+ P  +FLT  P+S    +    PP
Sbjct: 234 RWNDPAASFLTNKPVSSKATYQGYAPP 260


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/76 (23%), Positives = 31/76 (40%)
 Frame = -3

Query: 463 RQCCIFPPFFTRTIARSCGGIADMNFVKNDIGGFVRKAVTGCDHWRCILKKYNFLTPNGL 284
           RQ  + P   T     S   + ++  V+    G V + +        +LK   FL    L
Sbjct: 246 RQSSLIPDLITMKNTSSSYSLEELTSVQQM--GLVYEKIVFPSRIAAVLKSKLFLIFLFL 303

Query: 283 LDDDKYYAHLDKWTEL 236
            + + YY+ LD+W  +
Sbjct: 304 KNKNVYYSRLDEWLHI 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,102
Number of Sequences: 5004
Number of extensions: 56909
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)