Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k06
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0181 + 41836417-41836644,41837166-41837549                       30   2.0  
01_07_0182 + 41838805-41839152,41839230-41839610                       29   2.7  
05_03_0297 - 11911699-11911772,11911987-11912072,11912245-119123...    29   3.5  
06_01_0352 + 2541022-2542069,2542280-2542335                           28   6.2  
11_01_0758 + 6362500-6363233,6363709-6365500                           28   8.1  

>01_07_0181 + 41836417-41836644,41837166-41837549
          Length = 203

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -3

Query: 388 FVKNDIGGFVRKAVTGCDHWRCILKKYNFLTPNGLLDDDKYYAHLDKWTELNSAFKTVI 212
           F   D  G++    +G  HW  ++++   ++  G  D+D  Y  L +W +  +  +TV+
Sbjct: 115 FFAGDSVGYLDIVASGLAHWISVVEEVTGVSLMGGADEDDEYPALRRWAKEYTTDETVM 173


>01_07_0182 + 41838805-41839152,41839230-41839610
          Length = 242

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 388 FVKNDIGGFVRKAVTGCDHWRCILKKYNFLTPNGLLDDDKYYAHLDKW 245
           F   D  G++  A  G  HW  +L++   ++  G  DDD+ Y  L +W
Sbjct: 155 FFAGDAVGYLDVAAGGMAHWIGVLEEVTGVSVIGSEDDDE-YPSLQRW 201


>05_03_0297 -
           11911699-11911772,11911987-11912072,11912245-11912332,
           11912592-11912719,11913540-11913961,11931803-11932423
          Length = 472

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 291 FGVRKLYFFRIQRQWSHPVTAFLTKPPISFLTKFISAIPPQLLAI 425
           FG+  L  FR+  +WS  VT  L   P+ ++  F S+IP  ++ +
Sbjct: 416 FGILWLKAFRLLAEWSSLVTLHL---PLLYILAFSSSIPGSIVKV 457


>06_01_0352 + 2541022-2542069,2542280-2542335
          Length = 367

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -3

Query: 169 FPMEPCEFYNLHGCIRNFVNLG--CPVYMPTKECQEVKE 59
           F ++PC++  L+   R  + +G  C   + ++EC+EVKE
Sbjct: 289 FTVQPCQWRRLNTLGRRALFIGKYCSKSVSSEECEEVKE 327


>11_01_0758 + 6362500-6363233,6363709-6365500
          Length = 841

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -2

Query: 509 PNSSGQMSSTDRINV--SPMLYLST 441
           PN SG++SS D +NV  SP ++L T
Sbjct: 645 PNPSGKISSLDNLNVLSSPPIFLQT 669


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,642,772
Number of Sequences: 37544
Number of extensions: 332727
Number of successful extensions: 759
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)