Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k06
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68270-4|CAE46687.1|  755|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z68270-3|CAA92568.1|  769|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF077530-2|AAC26265.1|  436|Caenorhabditis elegans Hypothetical ...    28   7.3  

>Z68270-4|CAE46687.1|  755|Caenorhabditis elegans Hypothetical
           protein ZC410.4b protein.
          Length = 755

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 454 CIFPPFFTRTIARSCGGIADMNFVKNDIGGFVRKAVTGC 338
           CI       T+  SC GI  M    ND+G F+   + GC
Sbjct: 200 CITSAGRIATVIYSCVGIPFMLITLNDLGKFLYNNINGC 238


>Z68270-3|CAA92568.1|  769|Caenorhabditis elegans Hypothetical
           protein ZC410.4a protein.
          Length = 769

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 454 CIFPPFFTRTIARSCGGIADMNFVKNDIGGFVRKAVTGC 338
           CI       T+  SC GI  M    ND+G F+   + GC
Sbjct: 200 CITSAGRIATVIYSCVGIPFMLITLNDLGKFLYNNINGC 238


>AF077530-2|AAC26265.1|  436|Caenorhabditis elegans Hypothetical
           protein C40D2.2 protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -3

Query: 331 WRCILKKYNFLTPNGLLDDDKYYAHLDKWTELNSAFKTVILNAKVHCKLN 182
           WR  ++KYN      L  D + Y       E    FK +  + K+H K N
Sbjct: 178 WRMQIEKYNEFLATYLCCDKEMYEGRKLSIECEYEFKLISASGKLHSKQN 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,988,373
Number of Sequences: 27780
Number of extensions: 313502
Number of successful extensions: 799
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)