Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k05
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    79   6e-16
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    60   5e-10
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    36   0.007
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    29   0.81 
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    28   1.4  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   2.5  
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.3  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   4.3  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   4.3  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    26   5.7  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    26   5.7  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   5.7  
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   7.5  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   7.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   7.5  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    25   10.0 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   10.0 
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   10.0 

>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 1/144 (0%)
 Frame = -2

Query: 576 SQIIPGLYLSNARAAADKNVLRSLNITHVLTIAANRLPKSTFYDTDINTLFIRAYDTPQT 397
           S+I   LY+S+ + A++        I + L+ A +  P  +  +     L+++  D+   
Sbjct: 48  SEISKNLYISSWKTASELVSTSDKGIDYTLS-AMSINPNLSVPEQQ--HLWLQIEDSSSQ 104

Query: 396 NLLPYFPMANSFIDEGLQAG-NVLVHCHFGVSRSATLVIAYIMEKYKLTFEQAYVYVRQR 220
           N+L YF  +N FI   L     VLVHC  G+SRS TLV AY+M++     E+A  ++ +R
Sbjct: 105 NILQYFEKSNKFIAFALSKNAKVLVHCFAGISRSVTLVAAYLMKENNWNTEEALSHINER 164

Query: 219 RRFINPNPGFVKQLREYHRLGYDV 148
           R  I+PN  F++QLR Y    Y +
Sbjct: 165 RSGISPNANFLRQLRVYFECNYQL 188


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 26/58 (44%), Positives = 38/58 (65%)
 Frame = -2

Query: 333 VLVHCHFGVSRSATLVIAYIMEKYKLTFEQAYVYVRQRRRFINPNPGFVKQLREYHRL 160
           VL++C  G+SRSA L+IA+IM+   L    AY YV++R  +I PN   + QL EY ++
Sbjct: 154 VLINCQMGISRSACLMIAFIMKTLNLNVSDAYEYVKERSPWIGPNMSLIFQLSEYQQI 211


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -2

Query: 390 LPYFPMANSFID---EGLQAGNVLVHCHFGVSRSATLVIAYIMEKYKLTFEQAYVYVRQR 220
           +P   +   FID   E  + G + VHC  G+ R+  L+ AY++ K+  T  +   Y+R  
Sbjct: 260 VPELSLVKEFIDLTEEVEEDGVIAVHCKAGLGRTGCLIGAYLIYKHCFTANEVIAYMRIM 319

Query: 219 R 217
           R
Sbjct: 320 R 320


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 363 FIDEGLQAGNVLVHCHFGVSRSATLVI 283
           +++    +GN +VHC  GV R+ T ++
Sbjct: 456 YVNNSHGSGNTIVHCSAGVGRTGTFIV 482


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 648 LSSFKNWSRKAFYHKIDLCTQSCYSQIIPGLYLSNARAAADKNV 517
           LSS  +W   AF   +  C     S +I   YL++ +AAA  N+
Sbjct: 199 LSSLNSWQLAAFERSVSCCKSFIVSFMILKGYLNSEKAAALTNL 242


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 205 VNEPSALSNINIRLFERQLVFLHDIRDDQGRR 300
           +++PS +  +N+  F   L ++HD+RD  G R
Sbjct: 442 ISDPSDVDLLNLLSFLHALQYVHDVRDLLGLR 473


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 4/125 (3%)
 Frame = -2

Query: 750 FIIISMISARGLLFVMFKSAFIVAFL--TIPNPVVALSSFKNWSRKAFYHKIDLCTQSCY 577
           +I+    S R LL + + S  I  FL   I  P+ AL       R  FY      T S  
Sbjct: 164 YILSKFKSPRNLL-IPYPSFLIQKFLDMAILPPMAAL-------RILFYQYSKASTMSLT 215

Query: 576 SQIIPGLYLSNARAAADKNVLRSLNIT--HVLTIAANRLPKSTFYDTDINTLFIRAYDTP 403
                   L N     +  +   L++   H+ ++A  R     FY+TD+ T F+ A+   
Sbjct: 216 DDFYNKYVLENLNIINNLQIFLHLDLEPLHIKSLAKAR---KRFYETDLKTTFLNAFSRD 272

Query: 402 QTNLL 388
           +  +L
Sbjct: 273 ELLML 277


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = -3

Query: 602 STSALNLATARSFLASI*AMPVLQPTKMSFEASTSRTCSPLRRIASRNLLSMIPTSTPCS 423
           S++++ ++ + S L+S  + P+   T  S  +STS +   +   +S    S  PTST  S
Sbjct: 151 SSTSVEVSISSSSLSS--SDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSS 208

Query: 422 -LGPTTLLRPISCPTS 378
            L  ++++   S P+S
Sbjct: 209 YLSSSSVVSSSSSPSS 224


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 440 TSTPCSLGPTTLLRPISCPTSQWPTP 363
           +ST   + PT++  PI+ P +  PTP
Sbjct: 647 SSTTSQVAPTSIQEPIASPLTSKPTP 672


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 500 SRTCSPLRRIA-SRNLLSMIPTSTPCSLGPTTLLRPISCPTS 378
           +R  S   R++ +++ LS+ P+STP +  P   L   S PTS
Sbjct: 397 ARRASTANRVSVAKDRLSLTPSSTPSTPSPAESLPQPSNPTS 438


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 655 DRVGDGEESDNEGAFEHHKEQSSRTNHANNNEDFIFTLCIN 777
           D   D EESDNE   +  K+ S      NN+   +    +N
Sbjct: 238 DERSDEEESDNEQVNDEKKQSSEEDTTENNSAAEVIDETVN 278


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = +1

Query: 94  LVFPRFNL-HVSFKS----LKATHVVAQPMVFSELLHESRVRVNEPSALSNINIRLFERQ 258
           +VF  FN  H +++S    L+   + +Q   +S  LH+ ++R+ E S L N    L+E  
Sbjct: 337 VVFMSFNRWHANYESHVLDLQKAELFSQKAYYSIALHKWKLRIEELSDLMNKADDLYEVN 396

Query: 259 LV 264
           L+
Sbjct: 397 LL 398


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 446 IPTSTPCSLGPTTLLRPISCPTSQWPTPS 360
           +P STP    P+T +RP S  T   P+PS
Sbjct: 401 LPPSTPSK--PSTFVRPHSSSTDSPPSPS 427


>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 482 LRRIASRNLLSMIPTSTPCSLGPTTLLRPISCPTSQWPT 366
           L+ I     LS +PT    S+  T  +R + CP   WPT
Sbjct: 7   LKLILQSKKLSELPTHRK-SINMTIPVRALRCPIWLWPT 44


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 236 TYACSNVSLYFSMIYAMTRVADL 304
           TYAC N+SL+F +   + R   L
Sbjct: 437 TYACGNISLFFCLYKRLWRQPQL 459


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 615 FYHKIDLCTQSCYSQ 571
           FY  +DLC + CYSQ
Sbjct: 336 FYRLMDLCLRYCYSQ 350


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
 Frame = -2

Query: 558 LYLSNARAAADKNV-------LRSLNITHVLTIAANRLP 463
           +YL N  A  DKNV       L S N+  VL +   RLP
Sbjct: 23  MYLDNLEANTDKNVLALCREYLASENVKEVLNLFLTRLP 61


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = -3

Query: 548 AMPVLQPTKMSFEASTSRTCSPLRRIASRNLLSMIPTSTPCSLGPTTLLRPISCPTSQWP 369
           AM   +P  +   A+ S++ +P     S    +  PTS P      ++L  ++    + P
Sbjct: 150 AMASTEPVSVDSAAAPSQSTNPEGNGGSVGSQAAAPTSRPVENDAASILEALAAFAQKAP 209

Query: 368 TPS 360
            PS
Sbjct: 210 VPS 212


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 429 LFIRAYDTPQTNLLPYFPMANSFIDEGLQ 343
           + +R YD+P  N +   P   +FID+ L+
Sbjct: 245 VMLRKYDSPNKNAVLILPTLYAFIDKVLE 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,490
Number of Sequences: 5004
Number of extensions: 68044
Number of successful extensions: 212
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)