Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k04
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    28   1.1  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    27   2.6  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.5  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     26   6.1  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    26   6.1  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   6.1  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    25   8.1  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -1

Query: 317 YRKRDDKNKTRLHKQRGRKMSNRNAWSSR----KGNVYTLEA*NVFC*IDYNIRC-ACRG 153
           Y  RD+ NK +L  Q  +     N W  +    K N+ TL A ++      N++C AC+ 
Sbjct: 691 YNSRDENNKPKLITQLFKPSWKVNVWGFKSDKVKLNIRTLYASHLSMANLENLQCAACQS 750

Query: 152 TY 147
           TY
Sbjct: 751 TY 752


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -2

Query: 691 EPLVLSPGSMKEKKMISNEN--ILANLLRVKRSISYETIMFANDMREQFKTMIKSMDTPQ 518
           EP   +PG +++  M  N+       L  ++ SIS+ + +F+N ++      ++S  +  
Sbjct: 452 EPYDFNPGQIEKFIMNGNKKGAFSIRLNHIENSISFSSDLFSNPIKSSDSVSLQSTPSEL 511

Query: 517 SQEPLSSIVESTNGYVL 467
               L+ I +S +  ++
Sbjct: 512 ITSQLTRIAKSLSSVLM 528


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 377 SATASIWEFLRITQGRCGEKYRKRDDKNKTRLHKQRGRKMSN 252
           S+ + +W FL +T     ++ R        RLHK++ R +SN
Sbjct: 17  SSESEVWNFLDVTVSELNKQKRSPGQTVSKRLHKKQ-RVVSN 57


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -3

Query: 588 RLLCLRTT*ENNLRL*SRAWI---RRRVKNPFLASWSLRMVTYYD*RVTFP 445
           R+L  R   ENNLR+ + AWI    + +K P   S  L M+ Y   ++ FP
Sbjct: 25  RILSTRDPKENNLRMQAFAWISTLSKTLKFPVRTS-GLAMLLYSRFQLFFP 74


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 336 LCNSQEFPNTCRRAIQYFR 392
           LC +  +  TC R I+YFR
Sbjct: 327 LCTTTAYRQTCLRVIEYFR 345


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 379 SNIFAKKHCSRKNINWKTISFIGKSYTSIIVRNHS 483
           + + +K+H  RKNIN+  +     S  S  VR HS
Sbjct: 383 TGLLSKQHRPRKNINFTPLPPSTPSKPSTFVRPHS 417


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 314 RKRDDKNKTRLHKQRGRKMSNRNAWSSRKGN 222
           RKR++K + +  K+ G   SN+N  S  +G+
Sbjct: 352 RKRENKKRRKDQKKEGITSSNKNDDSGNEGS 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,137
Number of Sequences: 5004
Number of extensions: 56675
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)