Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k04
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0735 - 27667780-27667887,27668116-27668211,27668346-276684...    29   3.6  
09_06_0192 - 21450158-21450276,21451084-21451573,21451750-214518...    28   8.4  

>04_04_0735 -
           27667780-27667887,27668116-27668211,27668346-27668455,
           27668545-27668648,27669279-27669556
          Length = 231

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +2

Query: 365 LPSRYPIFSQRNTAQERI*IGKQ*VLLGKVTRQS*YVTIRRLHDARKGFLTLRRIH--AL 538
           LP+R    +   + +  + +G++   LGKVT  + Y T RR+ DA K  L L+ +H  A 
Sbjct: 12  LPARAGSIASPGSGRRVVPLGRRRASLGKVTAYA-YPTTRRVVDAAKSSL-LQDVHVAAS 69

Query: 539 DHSLKL 556
           + SL+L
Sbjct: 70  NPSLQL 75


>09_06_0192 -
           21450158-21450276,21451084-21451573,21451750-21451862,
           21451992-21452376,21452461-21452529,21453165-21453264,
           21454465-21454637,21454737-21454782,21454879-21454954,
           21455160-21455196,21455799-21456041
          Length = 616

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 230 FSNSRHSYSTFFFPFACVVEFYFYRLSSYISH 325
           F  S  +Y  F +PF C  +F    +S+Y SH
Sbjct: 166 FEVSVRAYGDFCWPFLCCFDFPSLTVSTYSSH 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,876,317
Number of Sequences: 37544
Number of extensions: 311921
Number of successful extensions: 677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)