Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k04
         (710 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT030125-1|ABN49264.1| 1429|Drosophila melanogaster IP14232p pro...    29   8.2  
BT028807-1|ABI34188.1|  158|Drosophila melanogaster RH52642p pro...    29   8.2  
BT023570-1|AAY84970.1|  235|Drosophila melanogaster IP09590p pro...    29   8.2  
AE014297-1350|ABI31164.1|  235|Drosophila melanogaster CG14714-P...    29   8.2  
AE014297-1349|AAF54673.1|  270|Drosophila melanogaster CG14714-P...    29   8.2  

>BT030125-1|ABN49264.1| 1429|Drosophila melanogaster IP14232p protein.
          Length = 1429

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 631  ILANLLRVKRSISYETIMFANDMREQFKTMIKSMDTPQSQ-EPLSSIVESTNGYV 470
            I+A LL  + S+   ++  AN++RE+  T+  SMD   S+ E  S+     NG +
Sbjct: 1287 IIAMLLEARSSLKSYSLEQANELREKSATLETSMDADGSKAEAGSTSSHEINGNI 1341


>BT028807-1|ABI34188.1|  158|Drosophila melanogaster RH52642p
           protein.
          Length = 158

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 631 ILANLLRVKRSISYETIMFANDMREQFKTMIKSMDTPQSQ-EPLSSIVESTNGYV 470
           I+A LL  + S+   ++  AN++RE+  T+  SMD   S+ E  S+     NG +
Sbjct: 93  IIAMLLEARSSLKSYSLEQANELREKSATLETSMDADGSKAEAGSTSSHEINGNI 147


>BT023570-1|AAY84970.1|  235|Drosophila melanogaster IP09590p
           protein.
          Length = 235

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 631 ILANLLRVKRSISYETIMFANDMREQFKTMIKSMDTPQSQ-EPLSSIVESTNGYV 470
           I+A LL  + S+   ++  AN++RE+  T+  SMD   S+ E  S+     NG +
Sbjct: 93  IIAMLLEARSSLKSYSLEQANELREKSATLETSMDADGSKAEAGSTSSHEINGNI 147


>AE014297-1350|ABI31164.1|  235|Drosophila melanogaster CG14714-PB,
           isoform B protein.
          Length = 235

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 631 ILANLLRVKRSISYETIMFANDMREQFKTMIKSMDTPQSQ-EPLSSIVESTNGYV 470
           I+A LL  + S+   ++  AN++RE+  T+  SMD   S+ E  S+     NG +
Sbjct: 93  IIAMLLEARSSLKSYSLEQANELREKSATLETSMDADGSKAEAGSTSSHEINGNI 147


>AE014297-1349|AAF54673.1|  270|Drosophila melanogaster CG14714-PA,
           isoform A protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 631 ILANLLRVKRSISYETIMFANDMREQFKTMIKSMDTPQSQ-EPLSSIVESTNGYV 470
           I+A LL  + S+   ++  AN++RE+  T+  SMD   S+ E  S+     NG +
Sbjct: 128 IIAMLLEARSSLKSYSLEQANELREKSATLETSMDADGSKAEAGSTSSHEINGNI 182


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,102,289
Number of Sequences: 53049
Number of extensions: 561732
Number of successful extensions: 1302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)