Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k04
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32683-12|CAA83624.2|  186|Caenorhabditis elegans Hypothetical p...    32   0.47 
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr...    31   0.81 
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina...    31   0.81 
Z68118-1|CAA92186.2| 1014|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF235027-1|AAF68380.1| 1017|Caenorhabditis elegans guanylyl cycl...    29   2.5  
Z81486-3|CAB03982.1|  346|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical p...    29   3.3  
U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine rece...    29   4.3  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    28   5.7  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    28   5.7  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    28   5.7  

>Z32683-12|CAA83624.2|  186|Caenorhabditis elegans Hypothetical
           protein R07E5.4 protein.
          Length = 186

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 20/76 (26%), Positives = 30/76 (39%)
 Frame = +2

Query: 2   KLLKRVIWPDIFNSR*KIECKMLTTDIIQTTYSYKVTLYCICMQ*SFYCTFLYKHI*CYS 181
           KLL+  IWP   N    +  +++       TY Y    +C CM  +  C          S
Sbjct: 34  KLLREQIWPFYVNRPGIMNLQIVPFGKGDCTYDYNRNFHCTCMHGATECDLNRLQNCAIS 93

Query: 182 QFNRKHFRLLMYTRSL 229
            F R+H  L+   + L
Sbjct: 94  YFPRRHLGLVTCLQGL 109


>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
           protein K03H1.2 protein.
          Length = 1131

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 326 GEKYRKRDDKNKTRLHKQRGRKMSNRNAWSSRKGN 222
           G KY+ RDD  +    +   R+ S+R  W  R G+
Sbjct: 89  GMKYKSRDDDRRRDRDRSERREPSSRRGWKDRSGD 123


>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
           determination protein MOG-1 protein.
          Length = 1131

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 326 GEKYRKRDDKNKTRLHKQRGRKMSNRNAWSSRKGN 222
           G KY+ RDD  +    +   R+ S+R  W  R G+
Sbjct: 89  GMKYKSRDDDRRRDRDRSERREPSSRRGWKDRSGD 123


>Z68118-1|CAA92186.2| 1014|Caenorhabditis elegans Hypothetical
           protein R01E6.1 protein.
          Length = 1014

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -2

Query: 685 LVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFANDMREQFKTMIKSMD 527
           L++ P S +   ++  +    N L +KRS   + I F ND+ +QF T+IK  D
Sbjct: 816 LIMPPRSYESATVMFVQICDFNAL-MKRSSPEQVIAFLNDIYDQFDTVIKRHD 867


>Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical
           protein K12D12.2 protein.
          Length = 1696

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 337 CVILKNSQILAVALSNIFAKKHCSRKNINWKTISFIGKSY 456
           C  +  ++  A  L +IF+K+HC   +  W++++   K Y
Sbjct: 504 CAAVCKNENTAALLYDIFSKEHCGPDSYGWESLASALKGY 543


>AF235027-1|AAF68380.1| 1017|Caenorhabditis elegans guanylyl cyclase
           protein.
          Length = 1017

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -2

Query: 685 LVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFANDMREQFKTMIKSMD 527
           L++ P S +   ++  +    N L +KRS   + I F ND+ +QF T+IK  D
Sbjct: 819 LIMPPRSYESATVMFVQICDFNAL-MKRSSPEQVIAFLNDIYDQFDTVIKRHD 870


>Z81486-3|CAB03982.1|  346|Caenorhabditis elegans Hypothetical
           protein C53A5.4 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 347 RITQGRCGEKYRKRDDKNKTRLHKQRGRKMSNRNAWSSRKGNVYTL 210
           ++ QG CG  Y+  D ++KT+ +  +    SN NA +  K  V  L
Sbjct: 25  QLGQGGCGSVYKVEDIEDKTKQYAMKVEFNSNANAGNVLKMEVQIL 70


>Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical
           protein T04A8.13 protein.
          Length = 791

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +2

Query: 197 HFRLLMYTRSLFSNSRHSYSTFFFPFACV 283
           HF +L     LFS S HS S FFF F+CV
Sbjct: 252 HFAILF----LFSFSPHSKSMFFFFFSCV 276


>U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 26 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 203 RLLMYTRSLFSNSRHSYSTFFFPFACVVEFYFYRLSSYIS-HRIAPV*FSR-IPKYLPSR 376
           R+    RS+  +  H +   F    CV E YFY +++Y S + +  + F R I  Y P  
Sbjct: 84  RIRQIYRSIVFDEDHCH-ILFNSSECVFELYFYYMTNYFSTYSVFSLTFDRLIACYFPKL 142

Query: 377 Y 379
           Y
Sbjct: 143 Y 143


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
            protein 104, isoforma protein.
          Length = 1584

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 697  RSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFAN 569
            RS  L+    S  ++ + SN++I+ NL  +KRS+S   I+  N
Sbjct: 1404 RSSDLLCRQKSKSDQNLASNDDIVDNLGGMKRSLSGSRILQLN 1446


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
            protein 104, isoformb protein.
          Length = 1628

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 697  RSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFAN 569
            RS  L+    S  ++ + SN++I+ NL  +KRS+S   I+  N
Sbjct: 1448 RSSDLLCRQKSKSDQNLASNDDIVDNLGGMKRSLSGSRILQLN 1490


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
            protein protein.
          Length = 1584

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 697  RSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFAN 569
            RS  L+    S  ++ + SN++I+ NL  +KRS+S   I+  N
Sbjct: 1404 RSSDLLCRQKSKSDQNLASNDDIVDNLGGMKRSLSGSRILQLN 1446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,583,478
Number of Sequences: 27780
Number of extensions: 313284
Number of successful extensions: 823
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)