Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k02
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    29   0.57 
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    26   5.3  

>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 548 SSHPKLH*LHPVDVLYLNPGNALWSPCRRLAL-LLHCHI 661
           SSH  LH LHP+DV     G     PC   +L LLHC I
Sbjct: 156 SSHSLLHPLHPIDVSLSKEG----LPCLVDSLGLLHCSI 190


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 737 HAGILSTIEAIDAGIPVVAIPLFGDQYGNAAAMQ-DAGMATIVHYQ 603
           HA  L+ IEA+D+G P+V+    GD  G  A ++  AG A  ++ Q
Sbjct: 94  HADTLAAIEAMDSGKPLVS-NARGDVDGTIALLRYCAGWADKIYGQ 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,870
Number of Sequences: 5004
Number of extensions: 62639
Number of successful extensions: 147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)