Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k01
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    35   0.015
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    31   0.14 
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    28   1.7  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   2.2  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   3.9  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   6.9  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    25   9.1  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    25   9.1  

>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 510 TLRHKNTGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQK 388
           T RHKNT  W +  + RA + +  R+ + EQ+     L Q+
Sbjct: 497 TQRHKNTSSWTRKMLERASHGEGTREAVNEQIRKGDELMQR 537


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -3

Query: 240 KYLKGKMFKHKEDSGSEDEAEKNNDTTKACSDAGLNT 130
           KYL+ ++   K +SGSE E++ + D++K  SD+  +T
Sbjct: 53  KYLRERIDALKVESGSERESQSDKDSSKKYSDSAKST 89


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 24/85 (28%), Positives = 33/85 (38%)
 Frame = -3

Query: 432 EIAEQLAVSRSLTQKTQXXXXXXXXXXDNVVIPDIALAQDPMNPWMLKQNNKSNVDAEFD 253
           E +E LAVS   T   +          + V   +    + P  P  L    + + D EFD
Sbjct: 43  EKSENLAVSSEKTTSKKKKGKKNKGNKNQVSDDESQELESPQGPKELTAVTELD-DDEFD 101

Query: 252 FGYKKYLKGKMFKHKEDSGSEDEAE 178
           +  KK  KGK  K  E+     E E
Sbjct: 102 YKPKKGKKGKKSKKVEEDDEPQEIE 126


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 400 TSTNC*LFCYFLPSLFIILCSDHFIF-CPLSSVLMPQC 510
           +ST+   F YFL S+F ++ +D+  +  PLS  L+  C
Sbjct: 214 SSTSAIEFAYFLDSIFTVVRTDYEHYRDPLSQTLITSC 251


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 510 TLRHKNTGKWAKNKMIRAKYDKEARQEIA 424
           +L H+NTG+W  N  I  KY     QEI+
Sbjct: 686 SLTHQNTGEW--NAFIFVKYFDRKSQEIS 712


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 309 MNPWMLKQNNKSNVDAEFDFGYKKYLKGKMFKHKEDSGSEDEAE 178
           +N +   Q+N S+  + F   Y   +    ++ KE S S+D AE
Sbjct: 309 LNDYQAAQSNISSPSSRFPTPYSPSVPFGTYQEKEKSYSQDHAE 352


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 40  LFSTVVFFNIFINLCTFIFVVKYFL 114
           +  T+ FFNIFI    F+  V  F+
Sbjct: 122 VIGTITFFNIFITAIAFVICVITFV 146


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -3

Query: 87  SAQIDKNIEEDNSTEQNQSDLNQPIQNNS 1
           SA+I+  IE+D + +QN SD    I+NNS
Sbjct: 174 SAEINSPIEKDVNPQQNISD--SSIKNNS 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,323
Number of Sequences: 5004
Number of extensions: 38905
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)