Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k01
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611...    46   3e-05
06_01_0636 + 4627533-4628546                                           31   1.3  
07_03_1654 - 28416487-28416548,28416791-28416824,28418156-284182...    29   3.1  
12_01_0286 - 2127622-2127897,2128611-2128997,2129195-2129550,212...    28   7.2  
01_06_0231 + 27727110-27727206,27727315-27727447,27727491-277275...    28   7.2  

>03_02_0961 +
           12759701-12760054,12760294-12760420,12760719-12761167,
           12761369-12761590,12761672-12761980,12762092-12762430,
           12762504-12762584,12762661-12762756,12762846-12763220,
           12763400-12763531,12763962-12764132
          Length = 884

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = -3

Query: 642 YHRILKKDRLKQQLKEFEELQKSNPXXXXXXXXXXXXXXXXXRHTLRHKNTGKWAKNKMI 463
           YHR+LKKD+LK    +FE    ++P                 R  L+HKNT KWAK  + 
Sbjct: 348 YHRMLKKDKLKAASADFE----ADPEAAKEHAMKQEFKRAEERMRLKHKNTSKWAKRILK 403

Query: 462 RA--KYDKEARQEIAEQLAVSRSLTQK 388
           R     D+  R  IA QL  +  LT+K
Sbjct: 404 RGLDVQDEGTRAAIAAQLQQNALLTRK 430


>06_01_0636 + 4627533-4628546
          Length = 337

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 507 LRHKNTGKWAKNKMIRAKYDKEARQEIAEQLAVSRS 400
           +RH+ TGK    K++   +D   R++IA ++A+ R+
Sbjct: 82  VRHRGTGKEYALKVLYGNHDDAVRRQIAREIAILRT 117


>07_03_1654 -
           28416487-28416548,28416791-28416824,28418156-28418212,
           28418401-28418450,28418968-28419025,28419136-28419182,
           28419278-28419377,28419446-28419586,28419715-28419780,
           28420024-28420118,28420440-28420629
          Length = 299

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 537 PEPPISLRPPLDYFFVILQTLLTVVLACLSSKFYD 641
           P PP      L  +F IL  +LTV + CL+ KF D
Sbjct: 108 PRPPGFAFVELLVYFWILLNILTVYICCLAMKFED 142


>12_01_0286 -
           2127622-2127897,2128611-2128997,2129195-2129550,
           2129923-2130046,2130128-2130196,2131190-2131238,
           2132222-2132336,2132854-2132903,2133000-2133137,
           2134182-2134228
          Length = 536

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 243 KKYLKGKMFKHKEDSGSEDEAEKNNDTTKACSD 145
           K Y K K+ + KE+   E E  +  D  K C +
Sbjct: 5   KNYYKEKLMRRKEEKKEEPETPRYRDRAKECRE 37


>01_06_0231 +
           27727110-27727206,27727315-27727447,27727491-27727553,
           27729069-27729140,27729640-27729783,27729868-27729990,
           27730102-27730157,27730249-27730635,27731176-27731366,
           27731498-27731630,27731715-27731869,27732188-27732379,
           27732490-27732750
          Length = 668

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = -3

Query: 300 WMLKQNNKSNVDAEFDFG-YKKYLKGKMFKHKE-----DSGSEDEAEKNND 166
           W L QN+  N D E DF  Y +  +G +++  E     DS SE+  + NN+
Sbjct: 179 WPLIQNSYRNFDQEIDFDVYDE--RGDVYQRSENGFESDSSSEENTKDNNN 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,878,801
Number of Sequences: 37544
Number of extensions: 218256
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)