Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13k01
(770 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87455-1|BAA13396.2| 772|Homo sapiens KIAA0266 protein. 94 4e-19
BC122536-1|AAI22537.1| 766|Homo sapiens UTP14, U3 small nucleol... 94 4e-19
BC089407-1|AAH89407.1| 766|Homo sapiens UTP14C protein protein. 94 4e-19
AL139082-4|CAI12891.1| 766|Homo sapiens UTP14, U3 small nucleol... 94 4e-19
BC014987-1|AAH14987.1| 771|Homo sapiens UTP14, U3 small nucleol... 94 6e-19
BC009649-1|AAH09649.1| 771|Homo sapiens UTP14, U3 small nucleol... 94 6e-19
BC001149-1|AAH01149.1| 771|Homo sapiens UTP14, U3 small nucleol... 94 6e-19
AL034405-6|CAI42909.1| 320|Homo sapiens UTP14, U3 small nucleol... 94 6e-19
AL034405-5|CAI42908.1| 771|Homo sapiens UTP14, U3 small nucleol... 94 6e-19
>D87455-1|BAA13396.2| 772|Homo sapiens KIAA0266 protein.
Length = 772
Score = 94.3 bits (224), Expect = 4e-19
Identities = 57/160 (35%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Frame = -3
Query: 717 LAKIRAQESYXXXXXXXXXXXXXXKYHRILKKDRLKQQLKEFEELQKSNPXXXXXXXXXX 538
L + RA +SY KYH+++KK + K+ LKEFE+LQK NP
Sbjct: 232 LQRARALQSYYEAKARKEKKIKSKKYHKVVKKGKAKKALKEFEQLQKVNPTVALEEMEKI 291
Query: 537 XXXXXXXRHTLRHKNTGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ----XXXX 370
R +L+H+N+GKWAK+K I AKYD EARQ + EQLA ++ LTQK Q
Sbjct: 292 ENARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVASESEEE 351
Query: 369 XXXXXXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 262
+ +++P +A + D NPWM + +A
Sbjct: 352 EGGTEVEELLVPHVANEVQMNVDGPNPWMFRSCTSDTKEA 391
>BC122536-1|AAI22537.1| 766|Homo sapiens UTP14, U3 small nucleolar
ribonucleoprotein, homolog C (yeast) protein.
Length = 766
Score = 94.3 bits (224), Expect = 4e-19
Identities = 57/160 (35%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Frame = -3
Query: 717 LAKIRAQESYXXXXXXXXXXXXXXKYHRILKKDRLKQQLKEFEELQKSNPXXXXXXXXXX 538
L + RA +SY KYH+++KK + K+ LKEFE+LQK NP
Sbjct: 226 LQRARALQSYYEAKARKEKKIKSKKYHKVVKKGKAKKALKEFEQLQKVNPTVALEEMEKI 285
Query: 537 XXXXXXXRHTLRHKNTGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ----XXXX 370
R +L+H+N+GKWAK+K I AKYD EARQ + EQLA ++ LTQK Q
Sbjct: 286 ENARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVASESEEE 345
Query: 369 XXXXXXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 262
+ +++P +A + D NPWM + +A
Sbjct: 346 EGGTEVEELLVPHVANEVQMNVDGPNPWMFRSCTSDTKEA 385
>BC089407-1|AAH89407.1| 766|Homo sapiens UTP14C protein protein.
Length = 766
Score = 94.3 bits (224), Expect = 4e-19
Identities = 57/160 (35%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Frame = -3
Query: 717 LAKIRAQESYXXXXXXXXXXXXXXKYHRILKKDRLKQQLKEFEELQKSNPXXXXXXXXXX 538
L + RA +SY KYH+++KK + K+ LKEFE+LQK NP
Sbjct: 226 LQRARALQSYYEAKARKEKKIKSKKYHKVVKKGKAKKALKEFEQLQKVNPTVALEEMEKI 285
Query: 537 XXXXXXXRHTLRHKNTGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ----XXXX 370
R +L+H+N+GKWAK+K I AKYD EARQ + EQLA ++ LTQK Q
Sbjct: 286 ENARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVASESEEE 345
Query: 369 XXXXXXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 262
+ +++P +A + D NPWM + +A
Sbjct: 346 EGGTEVEELLVPHVANEVQMNVDGPNPWMFRSCTSDTKEA 385
>AL139082-4|CAI12891.1| 766|Homo sapiens UTP14, U3 small nucleolar
ribonucleoprotein, homolog C (yeast) protein.
Length = 766
Score = 94.3 bits (224), Expect = 4e-19
Identities = 57/160 (35%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Frame = -3
Query: 717 LAKIRAQESYXXXXXXXXXXXXXXKYHRILKKDRLKQQLKEFEELQKSNPXXXXXXXXXX 538
L + RA +SY KYH+++KK + K+ LKEFE+LQK NP
Sbjct: 226 LQRARALQSYYEAKARKEKKIKSKKYHKVVKKGKAKKALKEFEQLQKVNPTVALEEMEKI 285
Query: 537 XXXXXXXRHTLRHKNTGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ----XXXX 370
R +L+H+N+GKWAK+K I AKYD EARQ + EQLA ++ LTQK Q
Sbjct: 286 ENARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVASESEEE 345
Query: 369 XXXXXXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 262
+ +++P +A + D NPWM + +A
Sbjct: 346 EGGTEVEELLVPHVANEVQMNVDGPNPWMFRSCTSDTKEA 385
>BC014987-1|AAH14987.1| 771|Homo sapiens UTP14, U3 small nucleolar
ribonucleoprotein, homolog A (yeast) protein.
Length = 771
Score = 93.9 bits (223), Expect = 6e-19
Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 9/161 (5%)
Frame = -3
Query: 717 LAKIRAQESYXXXXXXXXXXXXXXKYHRILKKDRLKQQLKEFEELQKSNPXXXXXXXXXX 538
L + RA +SY KYH+++KK + K+ LKEFE+L+K NP
Sbjct: 227 LQRARALQSYYEAKARREKKIKSKKYHKVVKKGKAKKALKEFEQLRKVNPAAALEELEKI 286
Query: 537 XXXXXXXRHTLRHKNTGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ-----XXX 373
R +L+H+N+GKWAK+K I AKYD EARQ + EQL+ ++ LTQK Q
Sbjct: 287 EKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLSKNKELTQKLQVASESEEE 346
Query: 372 XXXXXXXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 262
+ +++PD+ + D NPWML+ +A
Sbjct: 347 EGGTEDVEELLVPDVVNEVQMNADGPNPWMLRSCTSDTKEA 387
>BC009649-1|AAH09649.1| 771|Homo sapiens UTP14, U3 small nucleolar
ribonucleoprotein, homolog A (yeast) protein.
Length = 771
Score = 93.9 bits (223), Expect = 6e-19
Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 9/161 (5%)
Frame = -3
Query: 717 LAKIRAQESYXXXXXXXXXXXXXXKYHRILKKDRLKQQLKEFEELQKSNPXXXXXXXXXX 538
L + RA +SY KYH+++KK + K+ LKEFE+L+K NP
Sbjct: 227 LQRARALQSYYEAKARREKKIKSKKYHKVVKKGKAKKALKEFEQLRKVNPAAALEELEKI 286
Query: 537 XXXXXXXRHTLRHKNTGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ-----XXX 373
R +L+H+N+GKWAK+K I AKYD EARQ + EQL+ ++ LTQK Q
Sbjct: 287 EKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLSKNKELTQKLQVASESEEE 346
Query: 372 XXXXXXXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 262
+ +++PD+ + D NPWML+ +A
Sbjct: 347 EGGTEDVEELLVPDVVNEVQMNADGPNPWMLRSCTSDTKEA 387
>BC001149-1|AAH01149.1| 771|Homo sapiens UTP14, U3 small nucleolar
ribonucleoprotein, homolog A (yeast) protein.
Length = 771
Score = 93.9 bits (223), Expect = 6e-19
Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 9/161 (5%)
Frame = -3
Query: 717 LAKIRAQESYXXXXXXXXXXXXXXKYHRILKKDRLKQQLKEFEELQKSNPXXXXXXXXXX 538
L + RA +SY KYH+++KK + K+ LKEFE+L+K NP
Sbjct: 227 LQRARALQSYYEAKARREKKIKSKKYHKVVKKGKAKKALKEFEQLRKVNPAAALEELEKI 286
Query: 537 XXXXXXXRHTLRHKNTGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ-----XXX 373
R +L+H+N+GKWAK+K I AKYD EARQ + EQL+ ++ LTQK Q
Sbjct: 287 EKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLSKNKELTQKLQVASESEEE 346
Query: 372 XXXXXXXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 262
+ +++PD+ + D NPWML+ +A
Sbjct: 347 EGGTEDVEELLVPDVVNEVQMNADGPNPWMLRSCTSDTKEA 387
>AL034405-6|CAI42909.1| 320|Homo sapiens UTP14, U3 small nucleolar
ribonucleoprotein, homolog A (yeast) protein.
Length = 320
Score = 93.9 bits (223), Expect = 6e-19
Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 9/161 (5%)
Frame = -3
Query: 717 LAKIRAQESYXXXXXXXXXXXXXXKYHRILKKDRLKQQLKEFEELQKSNPXXXXXXXXXX 538
L + RA +SY KYH+++KK + K+ LKEFE+L+K NP
Sbjct: 59 LQRARALQSYYEAKARREKKIKSKKYHKVVKKGKAKKALKEFEQLRKVNPAAALEELEKI 118
Query: 537 XXXXXXXRHTLRHKNTGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ-----XXX 373
R +L+H+N+GKWAK+K I AKYD EARQ + EQL+ ++ LTQK Q
Sbjct: 119 EKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLSKNKELTQKLQVASESEEE 178
Query: 372 XXXXXXXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 262
+ +++PD+ + D NPWML+ +A
Sbjct: 179 EGGTEDVEELLVPDVVNEVQMNADGPNPWMLRSCTSDTKEA 219
>AL034405-5|CAI42908.1| 771|Homo sapiens UTP14, U3 small nucleolar
ribonucleoprotein, homolog A (yeast) protein.
Length = 771
Score = 93.9 bits (223), Expect = 6e-19
Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 9/161 (5%)
Frame = -3
Query: 717 LAKIRAQESYXXXXXXXXXXXXXXKYHRILKKDRLKQQLKEFEELQKSNPXXXXXXXXXX 538
L + RA +SY KYH+++KK + K+ LKEFE+L+K NP
Sbjct: 227 LQRARALQSYYEAKARREKKIKSKKYHKVVKKGKAKKALKEFEQLRKVNPAAALEELEKI 286
Query: 537 XXXXXXXRHTLRHKNTGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQ-----XXX 373
R +L+H+N+GKWAK+K I AKYD EARQ + EQL+ ++ LTQK Q
Sbjct: 287 EKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLSKNKELTQKLQVASESEEE 346
Query: 372 XXXXXXXDNVVIPDIA----LAQDPMNPWMLKQNNKSNVDA 262
+ +++PD+ + D NPWML+ +A
Sbjct: 347 EGGTEDVEELLVPDVVNEVQMNADGPNPWMLRSCTSDTKEA 387
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,652,262
Number of Sequences: 237096
Number of extensions: 1265124
Number of successful extensions: 3293
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3283
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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