Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k01
         (770 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069576-1|AAL39721.1|  771|Drosophila melanogaster LD31322p pro...   101   8e-22
AE014296-2539|AAF49613.2|  771|Drosophila melanogaster CG12301-P...   101   8e-22

>AY069576-1|AAL39721.1|  771|Drosophila melanogaster LD31322p
           protein.
          Length = 771

 Score =  101 bits (243), Expect = 8e-22
 Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 6/190 (3%)
 Frame = -3

Query: 717 LAKIRAQESYXXXXXXXXXXXXXXKYHRILKKDRLKQQLKEFEELQKSNPXXXXXXXXXX 538
           LA ++ +ES               K+H++ K+ ++ +Q+KEFE LQK++P          
Sbjct: 215 LAYLKMRESQKSAKARMQNKIKSKKFHKLQKRQKMLEQMKEFELLQKTDPEAALEKLNAL 274

Query: 537 XXXXXXXRHTLRHKNTGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQXXXXXXXX 358
                  R +LRHKNTG WAKN  IRAKYDK+ R+++AEQLAVSR LTQK Q        
Sbjct: 275 EKSRVQERASLRHKNTGTWAKNLQIRAKYDKDVRKDLAEQLAVSRELTQKKQVSDSEDET 334

Query: 357 XXDNVVIPDIALAQDPMNPW----MLKQNNKSNVDAEFDFGYKKY--LKGKMFKHKEDSG 196
               V+  +     DP NPW      +Q    N ++E    +++Y   + K  K  E+  
Sbjct: 335 TKKRVLPEEEDNDYDPFNPWTKRKATEQTENGNGESE-GSNWRQYWTKRNKNEKLLEEHR 393

Query: 195 SEDEAEKNND 166
            + E  ++ND
Sbjct: 394 RDLEGVQDND 403


>AE014296-2539|AAF49613.2|  771|Drosophila melanogaster CG12301-PA
           protein.
          Length = 771

 Score =  101 bits (243), Expect = 8e-22
 Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 6/190 (3%)
 Frame = -3

Query: 717 LAKIRAQESYXXXXXXXXXXXXXXKYHRILKKDRLKQQLKEFEELQKSNPXXXXXXXXXX 538
           LA ++ +ES               K+H++ K+ ++ +Q+KEFE LQK++P          
Sbjct: 215 LAYLKMRESQKSAKARMQNKIKSKKFHKLQKRQKMLEQMKEFELLQKTDPEAALEKLNAL 274

Query: 537 XXXXXXXRHTLRHKNTGKWAKNKMIRAKYDKEARQEIAEQLAVSRSLTQKTQXXXXXXXX 358
                  R +LRHKNTG WAKN  IRAKYDK+ R+++AEQLAVSR LTQK Q        
Sbjct: 275 EKSRVQERASLRHKNTGTWAKNLQIRAKYDKDVRKDLAEQLAVSRELTQKKQVSDSEDET 334

Query: 357 XXDNVVIPDIALAQDPMNPW----MLKQNNKSNVDAEFDFGYKKY--LKGKMFKHKEDSG 196
               V+  +     DP NPW      +Q    N ++E    +++Y   + K  K  E+  
Sbjct: 335 TKKRVLPEEEDNDYDPFNPWTKRKATEQTENGNGESE-GSNWRQYWTKRNKNEKLLEEHR 393

Query: 195 SEDEAEKNND 166
            + E  ++ND
Sbjct: 394 RDLEGVQDND 403


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,245,503
Number of Sequences: 53049
Number of extensions: 398672
Number of successful extensions: 1249
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3561257073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)