Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13k01
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical pr...    41   0.001
AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    31   0.69 
Z47073-4|CAM33507.1|  954|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z47073-3|CAA87374.1|  999|Caenorhabditis elegans Hypothetical pr...    28   8.5  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    28   8.5  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    28   8.5  
AL110477-10|CAB54334.1|  328|Caenorhabditis elegans Hypothetical...    28   8.5  

>U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical
           protein F27C1.6 protein.
          Length = 647

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = -3

Query: 642 YHRILKKDRLKQQLKEFEELQKSNPXXXXXXXXXXXXXXXXXRHTLRHKNTGKWAKNKMI 463
           YHRILK+++ KQ LKEF++L   +P                 R +L+H+   +  K  + 
Sbjct: 207 YHRILKREKRKQLLKEFDDLVARDPSAAHEKLAEMDLQRIMERGSLKHRGQNQKFKQMLE 266

Query: 462 R-AKYDKEARQEIAEQLAVSRSLTQK 388
           + A  + E ++ + E L + R L  K
Sbjct: 267 KHASRNPEVKKLLDEHLRMGRELKAK 292


>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 276 SNVDAEFDFGYKKYLKGKMFKHKEDSGSEDEAEKNNDTTKA 154
           S+ D++ DF  KK+ K K  + K D  S+D++E      K+
Sbjct: 221 SDSDSDSDFDKKKWKKNKAKRSKRDDSSDDDSEMERRRKKS 261


>Z47073-4|CAM33507.1|  954|Caenorhabditis elegans Hypothetical
           protein ZC506.4b protein.
          Length = 954

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 382 LCLLCQTSTNC*LFCYFLPSLFIILCSDH 468
           LC+    S N  L C F P L+IIL   H
Sbjct: 859 LCISISMSANVALACIFSPKLWIILFEKH 887


>Z47073-3|CAA87374.1|  999|Caenorhabditis elegans Hypothetical
           protein ZC506.4a protein.
          Length = 999

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 382 LCLLCQTSTNC*LFCYFLPSLFIILCSDH 468
           LC+    S N  L C F P L+IIL   H
Sbjct: 904 LCISISMSANVALACIFSPKLWIILFEKH 932


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 282 NKSNVDAEFDFGYKKYLKGKMFKHKEDSGSEDEAEKNNDTTKACSD 145
           +K++   +FD    ++L+ +  +H   SGSE E E  +   +  SD
Sbjct: 258 DKASSSRQFDSHIPRHLQQQRSRHDSSSGSESEHETRSSHRRRNSD 303


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 282 NKSNVDAEFDFGYKKYLKGKMFKHKEDSGSEDEAEKNNDTTKACSD 145
           +K++   +FD    ++L+ +  +H   SGSE E E  +   +  SD
Sbjct: 258 DKASSSRQFDSHIPRHLQQQRSRHDSSSGSESEHETRSSHRRRNSD 303


>AL110477-10|CAB54334.1|  328|Caenorhabditis elegans Hypothetical
           protein Y113G7B.15 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 698 KNHIELQKLNAKVKSRARNI 639
           KNH ++Q+LNAK +   RN+
Sbjct: 22  KNHQKIQELNAKARREGRNV 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,089,592
Number of Sequences: 27780
Number of extensions: 226729
Number of successful extensions: 815
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)