Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13k01
(770 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.4
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.4
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 23 4.2
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 23 4.2
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 7.3
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 7.3
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 7.3
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 7.3
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 7.3
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 7.3
AB264335-1|BAF44090.1| 87|Apis mellifera ecdysone-induced prot... 22 7.3
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 22 7.3
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.4 bits (48), Expect = 2.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 504 AVYVFLML*IFPEPPISLRPPLDYFFVILQTLLTVVLACLS 626
+++VF +L + PP SL PL ++I +L + C++
Sbjct: 285 SLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVT 325
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.4 bits (48), Expect = 2.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 504 AVYVFLML*IFPEPPISLRPPLDYFFVILQTLLTVVLACLS 626
+++VF +L + PP SL PL ++I +L + C++
Sbjct: 285 SLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVT 325
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 382 LCLLCQTSTNC*LFCYFLPSLFIIL 456
LC+ S L C + P ++IIL
Sbjct: 740 LCVAISLSATVTLVCLYSPKIYIIL 764
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 382 LCLLCQTSTNC*LFCYFLPSLFIIL 456
LC+ S L C + P ++IIL
Sbjct: 830 LCVAISLSATVTLVCLYSPKIYIIL 854
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 207 EDSGSEDEAEKNNDTTKACS 148
EDS ED ND ++CS
Sbjct: 235 EDSRHEDRNSYRNDGERSCS 254
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 207 EDSGSEDEAEKNNDTTKACS 148
EDS ED ND ++CS
Sbjct: 235 EDSRHEDRNSYRNDGERSCS 254
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 207 EDSGSEDEAEKNNDTTKACS 148
EDS ED ND ++CS
Sbjct: 235 EDSRHEDRNSYRNDGERSCS 254
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 207 EDSGSEDEAEKNNDTTKACS 148
EDS ED ND ++CS
Sbjct: 235 EDSRHEDRNSYRNDGERSCS 254
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 207 EDSGSEDEAEKNNDTTKACS 148
EDS ED ND ++CS
Sbjct: 235 EDSRHEDRNSYRNDGERSCS 254
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 207 EDSGSEDEAEKNNDTTKACS 148
EDS ED ND ++CS
Sbjct: 235 EDSRHEDRNSYRNDGERSCS 254
>AB264335-1|BAF44090.1| 87|Apis mellifera ecdysone-induced protein
75 protein.
Length = 87
Score = 21.8 bits (44), Expect = 7.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2
Query: 769 NRCTQCRMKK 740
NRC CR+KK
Sbjct: 69 NRCQYCRLKK 78
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 21.8 bits (44), Expect = 7.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2
Query: 769 NRCTQCRMKK 740
NRC CR+KK
Sbjct: 118 NRCQYCRLKK 127
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,819
Number of Sequences: 438
Number of extensions: 2687
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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