Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13j23
(406 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6 |Sc... 60 2e-10
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 28 0.63
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 27 1.5
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 1.9
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 26 2.6
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 26 2.6
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 3.4
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 25 5.9
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 24 7.8
>SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 59.7 bits (138), Expect = 2e-10
Identities = 32/92 (34%), Positives = 52/92 (56%)
Frame = -2
Query: 330 SKKRMWRSLKQILTADRALPWPNEAVLYYSINAPPTFKPIKKYSDISGLPAPYMDRHSKL 151
++ R R+L+QI+ D P++ Y SI APP+ P KY D++GL A Y D ++L
Sbjct: 26 AQPRRNRNLRQIIQNDPVQNEPSK-FSYSSIEAPPSVLPQPKYCDVTGLLAIYTDPKTRL 84
Query: 150 YFSNAEEFATVRNLPMDITAGYLQLRGANTIV 55
+ N E + +R LP YL+LR ++ ++
Sbjct: 85 RYHNKEIYGLIRELPSGADQEYLKLRSSDVVL 116
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 27.9 bits (59), Expect = 0.63
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 264 NEAVLYYSINAPPTFKPIKKYSDISGLPAP 175
N + L + P F PI SDI GLP P
Sbjct: 163 NGSELNVGVLGPSLFNPIGNLSDIPGLPQP 192
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 1.5
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = -2
Query: 381 EKYYCFKRENKFIVKSGSKKRMWRSLKQILTADRALPWPNEAVLYYSINAPPTFKPIKKY 202
+K + FK+ K +VK + + + + + + + + P PN + + S P P
Sbjct: 157 DKTHSFKKFYKSLVKEDEENGIEKKINEAMNSSASQPLPN-STNFASTTFPSV--PFHPL 213
Query: 201 SDISGLPAPYMDRHSKL 151
SGL Y+DR+S L
Sbjct: 214 PVDSGL-QKYIDRNSNL 229
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 26.2 bits (55), Expect = 1.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 210 KKYSDISGLPAPYMDRHSKLYFSNAEEFATVRN 112
K Y D G P P D H++L + F+ + N
Sbjct: 749 KAYFDSEGKPHPITDSHNRLLVPSTRTFSQLLN 781
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 2.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 261 EAVLYYSINAPPTFKPIKKYSDISGL 184
E V + SIN P+FK + K S IS L
Sbjct: 283 ETVGWVSINGIPSFKSLVKLSGISSL 308
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 2.6
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 251 KTASFGHGNARSAVKICFK-DLHIRFLDPLFTMNLFSLLKQ*YF 379
KT + HGN V +C K IRFLDPL T+ +L Y+
Sbjct: 265 KTVAKAHGNIAQLV-VCTKVGPTIRFLDPL-TLQTCDMLPSIYW 306
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 3.4
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = -3
Query: 329 LKNVCGDL*NKS*QPIEHYHGQMKQFYIIQ*MLRQHSNLLKNIQTYQDYQHHIWIDTQNF 150
L V D+ ++ + +++Y G QFY + + N L+ + +Y+ H+ Q+F
Sbjct: 414 LNEVATDIIHQHSERLDYYKGNFSQFYATR--EERCKNQLREYEKQMEYRKHL----QSF 467
Query: 149 IFLMLKNLQQSGTFQ 105
I N +S Q
Sbjct: 468 IDKFRYNAAKSSEAQ 482
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 24.6 bits (51), Expect = 5.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 198 DISGLPAPYMDRHSKLY 148
DIS P YMD+H+K+Y
Sbjct: 234 DISYDPFYYMDKHNKVY 250
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 24.2 bits (50), Expect = 7.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 246 YSINAPPTFKPIKKYSD 196
Y IN PP +P++ Y+D
Sbjct: 83 YPINDPPEGRPVRVYAD 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,725,611
Number of Sequences: 5004
Number of extensions: 35145
Number of successful extensions: 74
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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