Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j14
         (429 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    24   0.83 
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    24   0.83 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   1.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   1.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   1.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   1.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   2.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.8  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 23.8 bits (49), Expect = 0.83
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 428 SVYFKTHYKYTIRWQCQKSKSKQFQVL 348
           SV+FK+H     + QC+K    Q Q L
Sbjct: 60  SVFFKSHITEAFQTQCKKCTEIQKQNL 86


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 23.8 bits (49), Expect = 0.83
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 428 SVYFKTHYKYTIRWQCQKSKSKQFQVL 348
           SV+FK+H     + QC+K    Q Q L
Sbjct: 60  SVFFKSHITEAFQTQCKKCTEIQKQNL 86


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 336 KYTFRNGGYNNTAEK 292
           KY + N  YNN  +K
Sbjct: 97  KYNYNNNNYNNNCKK 111


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 336 KYTFRNGGYNNTAEK 292
           KY + N  YNN  +K
Sbjct: 97  KYNYNNNNYNNNCKK 111


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 336 KYTFRNGGYNNTAEK 292
           KY + N  YNN  +K
Sbjct: 97  KYNYNNNNYNNNCKK 111


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 336 KYTFRNGGYNNTAEK 292
           KY + N  YNN  +K
Sbjct: 97  KYNYNNNNYNNNCKK 111


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 242 ISYKTHDGLCCVCHKTPLQTRIYHSHL 162
           I  KT+   C +C K   Q  +Y SHL
Sbjct: 57  IEEKTYQ--CLLCQKAFDQKNLYQSHL 81


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = -2

Query: 362  QFQVLKFTINIHLEMEDTTTQQKNKTTIVKDEIDGKYYD 246
            ++Q+   T+N  L+ +    +  N+  +V D++   Y D
Sbjct: 1012 EYQIHPKTLNEVLQADMNALKNFNQPLLVNDQLGQLYLD 1050


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,276
Number of Sequences: 438
Number of extensions: 2228
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)