Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j13
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    29   0.52 
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    27   2.1  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    25   4.9  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   6.5  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   8.5  

>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 247 SPRASPHLTPQASDQTVVAVDSST-RDRSTNVADPFMVAVPYTLPDS*KS 101
           SP  S H   +       +V +ST R+RST+VA  F+ +     PD  KS
Sbjct: 257 SPATSKHEPEETPASPTPSVSASTSRERSTSVAPSFITSDQAATPDVLKS 306


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 286 STLHVHVTLSPHRSPRASPHLTP 218
           S L  H  LSP+RSP + P L P
Sbjct: 150 SYLGYHNNLSPYRSPNSYPSLLP 172


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 149 SIYGRCSVYFAGFLKVLDRKLIYITS 72
           S+ G CSV+F   L+++  +L YIT+
Sbjct: 124 SLAGTCSVFFTYPLELIRVRLAYITN 149


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 280 LHVHVTLSPHRSPRASPHLTPQASDQTVVAVDSSTRDRSTNVADPFMVAV 131
           LH+H+   P     +  HLT Q   Q +V +  +     TN +  F++AV
Sbjct: 393 LHMHLLAHPISLSASQSHLTKQTVRQFLVKI--TELHSKTNPSRAFLLAV 440


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 223 TPQASDQTVVAVDSSTRDRSTNVADPFMVAVP 128
           TPQ +   V    S TR RS+   DPF    P
Sbjct: 161 TPQRAGAGVSTATSHTRRRSSAGTDPFSPVSP 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,519,847
Number of Sequences: 5004
Number of extensions: 24559
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)