Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13j09
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0339 - 28094581-28094817,28095011-28096381,28097713-280979... 27 5.5
11_03_0016 - 8981218-8981290,8981512-8981558,8981688-8981842,898... 26 7.2
09_06_0330 - 22376394-22376505,22376609-22376744,22376835-223769... 26 7.2
08_02_1633 + 28392378-28393445 26 7.2
06_03_0853 - 25384198-25384731,25384810-25385210,25385816-25386011 26 7.2
08_02_0035 + 11453171-11455186 26 9.6
03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,688... 26 9.6
01_06_0889 - 32741326-32741571,32741671-32741812,32741908-327422... 26 9.6
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 26 9.6
>02_05_0339 -
28094581-28094817,28095011-28096381,28097713-28097922,
28098047-28098283,28098677-28099041,28099661-28099970
Length = 909
Score = 26.6 bits (56), Expect = 5.5
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 53 YPCLLRSESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPY-WRSIHCSPVEQSQALW 217
YP + + R+ T P P K R I + +P WR +H V Q +W
Sbjct: 710 YPDRVMRQLGRKQTIPPPPPHDESKLRQLHKINHTGKPRDWRKLHAEYVNQYNRIW 765
>11_03_0016 -
8981218-8981290,8981512-8981558,8981688-8981842,
8981930-8982023,8982158-8982231,8982250-8982283,
8982689-8982807,8983586-8983673,8983901-8983963,
8983964-8984018,8984527-8984575,8985693-8985753,
8986288-8986638
Length = 420
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 140 QHIPTSTEPYWRSIHCSPVEQSQALWSISLSVFRCCSYL 256
+H+ S++ +W S H S V+++Q I + R C ++
Sbjct: 313 KHVHRSSDGWWGSFHGSDVKKNQLASEIIDHLLRECCWM 351
>09_06_0330 -
22376394-22376505,22376609-22376744,22376835-22376942,
22377056-22377152,22377490-22377594,22377699-22377884,
22378312-22378371,22378545-22378781
Length = 346
Score = 26.2 bits (55), Expect = 7.2
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Frame = -1
Query: 305 IYLATQNIAAMTSYTPEDMNNIETPKEKCSIELGFVQQDYNEWNANT----ALWMLVYAV 138
IY+ NI +T +DM + K K + L + + Y +W+ ++ AL+ L V
Sbjct: 214 IYVVGLNITTQVYFTDKDMLELRNSKGKHAQFLCDICKFYRDWHVHSYGVDALF-LHDPV 272
Query: 137 LFWILTYVMVLTVAVCFDVGFRSVTSMGIVNGH 39
F L + T F G V + GI GH
Sbjct: 273 SFTALVHPEYFT----FKKGVVRVETQGICKGH 301
>08_02_1633 + 28392378-28393445
Length = 355
Score = 26.2 bits (55), Expect = 7.2
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 62 LLRSESRRRSTQPRLKPSHTLKSRIKQH-IPTSTEPYWRSIHCSPVEQSQA-LWSISLS 232
LL R R + R++ SH+ ++QH P+S+ S QS A WS++ S
Sbjct: 148 LLTDAERLRDARRRIRVSHSTHELVQQHGSPSSSSGSPSSASSRTSSQSHASSWSVASS 206
>06_03_0853 - 25384198-25384731,25384810-25385210,25385816-25386011
Length = 376
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 107 KPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQS 205
KPS+ + + PTS EP ++CS + S
Sbjct: 244 KPSNKKQKTVANSSPTSVEPADLDVYCSDAQPS 276
>08_02_0035 + 11453171-11455186
Length = 671
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 167 TALWMLVYAVLFWILTYVMVLTVAVCFDVGFRSVTSMGI 51
++LW+ +F L VM L VAVC +V +T MG+
Sbjct: 551 SSLWLGRVYYVFGFLLVVMALLVAVCGEVSV-VLTYMGL 588
>03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,
68871-69005,69131-69310,69495-69701,69821-69943,
70240-70359,70758-70880,72067-72171,72254-72398,
73443-73607,73669-73907,74452-74484,74977-75058,
75200-75360,75739-75951,76789-76971,77051-77220,
77375-77474
Length = 1021
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 65 LRSESRRRSTQPRLKPSHTLKSRIK 139
+ E+RRR+ RL+ HTLK +++
Sbjct: 977 MAEEARRRAEITRLRELHTLKGKVE 1001
>01_06_0889 -
32741326-32741571,32741671-32741812,32741908-32742218,
32742317-32742446,32742543-32742773,32742918-32742976,
32743077-32743300,32743508-32743559
Length = 464
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 155 STEPYWRSIHCSPVEQSQALWSISLSVFRCCSYL 256
+TE YW + +PV + + I L C +YL
Sbjct: 296 ATEQYWEPVEGAPVPSGRRPYRIELVGIICDAYL 329
>01_06_0293 - 28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = -3
Query: 156 DVGICCFILDFNVCDGFN-RGCVLRRRLS-----LRNKHGYCQWSQQI 31
+V IC F+ D C+G + C LR+R + K G+ + +QQ+
Sbjct: 1083 EVDICVFVFDIMFCNGQSLLNCSLRQRRKYIHDLFQEKPGHFELAQQL 1130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,148,691
Number of Sequences: 37544
Number of extensions: 181945
Number of successful extensions: 492
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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