Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j09
         (350 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X04754-2|CAA28451.1|  420|Drosophila melanogaster yolk polypepti...    28   2.9  
M15898-1|AAA29024.1|  420|Drosophila melanogaster protein ( D.me...    28   2.9  
AY113561-1|AAM29566.1|  215|Drosophila melanogaster RH08557p pro...    28   2.9  
AE014298-1957|AAF48314.2|  420|Drosophila melanogaster CG11129-P...    28   2.9  
BT012348-1|AAS77473.1|  378|Drosophila melanogaster AT04751p pro...    27   8.9  
AE014296-1949|AAF50065.2|  378|Drosophila melanogaster CG12289-P...    27   8.9  

>X04754-2|CAA28451.1|  420|Drosophila melanogaster yolk polypeptide
           3 protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 59  CLL-RSESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQ 202
           CLL  + + + ++  RLKP+  L +   +++P+  +  W  +   P+EQ
Sbjct: 12  CLLVAAHASKDASNDRLKPTKWLTATELENVPSLNDITWERLENQPLEQ 60


>M15898-1|AAA29024.1|  420|Drosophila melanogaster protein (
           D.melanogaster yp3 geneencoding yolk protein 3, complete
           cds. ).
          Length = 420

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 59  CLL-RSESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQ 202
           CLL  + + + ++  RLKP+  L +   +++P+  +  W  +   P+EQ
Sbjct: 12  CLLVAAHASKDASNDRLKPTKWLTATELENVPSLNDITWERLENQPLEQ 60


>AY113561-1|AAM29566.1|  215|Drosophila melanogaster RH08557p
           protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 59  CLL-RSESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQ 202
           CLL  + + + ++  RLKP+  L +   +++P+  +  W  +   P+EQ
Sbjct: 12  CLLVAAHASKDASNDRLKPTKWLTATELENVPSLNDITWERLENQPLEQ 60


>AE014298-1957|AAF48314.2|  420|Drosophila melanogaster CG11129-PA
           protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 59  CLL-RSESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQ 202
           CLL  + + + ++  RLKP+  L +   +++P+  +  W  +   P+EQ
Sbjct: 12  CLLVAAHASKDASNDRLKPTKWLTATELENVPSLNDITWERLENQPLEQ 60


>BT012348-1|AAS77473.1|  378|Drosophila melanogaster AT04751p
           protein.
          Length = 378

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 251 MNNIETPKEKCSIELGFVQQDYNEWNANTALWMLVYAV-LFWILT 120
           M+ ++   ++CS + G +Q+     N +TAL +L   V LF +LT
Sbjct: 27  MDKVDFQCDRCSTQNGMLQRSGRSSNVSTALRLLGANVELFGVLT 71


>AE014296-1949|AAF50065.2|  378|Drosophila melanogaster CG12289-PA,
           isoform A protein.
          Length = 378

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 251 MNNIETPKEKCSIELGFVQQDYNEWNANTALWMLVYAV-LFWILT 120
           M+ ++   ++CS + G +Q+     N +TAL +L   V LF +LT
Sbjct: 27  MDKVDFQCDRCSTQNGMLQRSGRSSNVSTALRLLGANVELFGVLT 71


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,692,149
Number of Sequences: 53049
Number of extensions: 321920
Number of successful extensions: 1004
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 838265760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)