Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j09
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67953-6|ABA00176.1|  287|Caenorhabditis elegans Hypothetical pr...    29   0.71 
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    29   0.71 
U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical pr...    28   2.2  
AC024817-39|AAP68916.1|  128|Caenorhabditis elegans Hypothetical...    27   2.9  
U23455-2|AAC46534.1|  423|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z70783-3|CAA94853.4|  755|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      26   6.6  
Z82060-9|CAJ85764.1|  166|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z82060-8|CAJ85763.1|  114|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z82060-7|CAB04884.1|  454|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z71258-2|CAA95781.2|  668|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>U67953-6|ABA00176.1|  287|Caenorhabditis elegans Hypothetical
           protein ZC13.10 protein.
          Length = 287

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +2

Query: 74  ESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQSQALWSISLSVFRCC 247
           ES+ R     L P H +  R       ST   W SI  S +  S+  +    S  +CC
Sbjct: 58  ESKERCNNDLLIPCHLMPPRDPYASRLSTSSAWSSIRLSVLSLSRVFFLKPCSKHKCC 115


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 71  SESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQSQALWSISLS 232
           SE+ RRST    K S   +  +KQ  P+ +E Y    + +P+   ++   +  S
Sbjct: 341 SENERRSTATASKKSRMDELEVKQEPPSDSEDYIAKTNLAPIRVEKSAEKVEKS 394


>U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical
           protein F45F2.7 protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 221 CSIELGFVQQDYNEWNANTALWMLVY--AVLFWILTYVMVL 105
           C I +       + W A T   +L+Y  A+LF++ TY+M++
Sbjct: 79  CLISISSAWSSPDLWLAETIFSLLMYLIAILFFMYTYLMII 119


>AC024817-39|AAP68916.1|  128|Caenorhabditis elegans Hypothetical
           protein Y54G2A.36 protein.
          Length = 128

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 123 NVCDGFNRGCVLRRRLSLRNKHGYCQWSQQICK 25
           + C GFNR     +  S R+ H   QWS++ C+
Sbjct: 63  SACGGFNRCLHQEQSHSDRSPHFILQWSRRQCR 95


>U23455-2|AAC46534.1|  423|Caenorhabditis elegans Hypothetical
           protein F55E10.5 protein.
          Length = 423

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 21/87 (24%), Positives = 37/87 (42%)
 Frame = -1

Query: 338 FDLMK*NLTYLIYLATQNIAAMTSYTPEDMNNIETPKEKCSIELGFVQQDYNEWNANTAL 159
           FD++   LTY   +    +     YT + MN   T      + L   +    +       
Sbjct: 40  FDILSEFLTYKYVVNAITLNLTIKYTSQKMNETHT-DSIIDVTLAIEETSQKQHQ----- 93

Query: 158 WMLVYAVLFWILTYVMVLTVAVCFDVG 78
            M+  AVL++IL  ++V+ +  C D+G
Sbjct: 94  -MITVAVLWFILAILLVMVIFAC-DLG 118


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
           protein K04G2.8b protein.
          Length = 1188

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 65  LRSESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQSQA 211
           ++SE    S+ P++K S  L         T++ P W     SP+ +S +
Sbjct: 777 IQSEMPTSSSTPKMKVSPRLNGFFSPTQKTTSSPAWSHPDTSPIPKSSS 825


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical
           protein K04G2.8a protein.
          Length = 1186

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 65  LRSESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQSQA 211
           ++SE    S+ P++K S  L         T++ P W     SP+ +S +
Sbjct: 775 IQSEMPTSSSTPKMKVSPRLNGFFSPTQKTTSSPAWSHPDTSPIPKSSS 823


>Z70783-3|CAA94853.4|  755|Caenorhabditis elegans Hypothetical
           protein ZK856.5 protein.
          Length = 755

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 138 NSIYQHPQSRIGVPFIVVLLNKAKLYGAFLFRCFDV 245
           NS YQHP+ +   P   +L+N     G   F   DV
Sbjct: 482 NSTYQHPKKKEKSPKNAILINLKNTLGGEKFTVEDV 517


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 65  LRSESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQSQA 211
           ++SE    S+ P++K S  L         T++ P W     SP+ +S +
Sbjct: 775 IQSEMPTSSSTPKMKVSPRLNGFFSPTQKTTSSPAWSHPDTSPIPKSSS 823


>Z82060-9|CAJ85764.1|  166|Caenorhabditis elegans Hypothetical
           protein T27F6.5c protein.
          Length = 166

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 153 HPQSRIGVPFIVVLLNKAK 209
           H  +R+G+PFI+V+ N+ +
Sbjct: 81  HDANRLGIPFILVIANETE 99


>Z82060-8|CAJ85763.1|  114|Caenorhabditis elegans Hypothetical
           protein T27F6.5b protein.
          Length = 114

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 153 HPQSRIGVPFIVVLLNKAK 209
           H  +R+G+PFI+V+ N+ +
Sbjct: 29  HDANRLGIPFILVIANETE 47


>Z82060-7|CAB04884.1|  454|Caenorhabditis elegans Hypothetical
           protein T27F6.5a protein.
          Length = 454

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 153 HPQSRIGVPFIVVLLNKAK 209
           H  +R+G+PFI+V+ N+ +
Sbjct: 369 HDANRLGIPFILVIANETE 387


>Z71258-2|CAA95781.2|  668|Caenorhabditis elegans Hypothetical
           protein C01H6.2 protein.
          Length = 668

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 299 LATQNIAAMTSYTPEDMNNIE 237
           L  +++ AM SYTPE+M  IE
Sbjct: 637 LQQKDLEAMNSYTPENMKLIE 657


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,248,858
Number of Sequences: 27780
Number of extensions: 170350
Number of successful extensions: 644
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)