Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13j07
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    29   0.57 
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    28   1.3  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    27   2.3  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   4.0  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   5.3  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    25   9.2  

>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 265 KLWTKHRLNISCLQHIHNYLNVKYFDNNNLHNSDIVGF 378
           K W  ++  +  LQ ++N+   +Y +  +L+N  I GF
Sbjct: 550 KYWKINQAMLVTLQRLYNFYRFQYLEEQSLYNFKIPGF 587


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 190 NKKSEL*THTKIGYLRKILNWNNQIKLWTKHRLNISCLQHIHNYLNVK 333
           N++ E+ T+  +  LR +++ N +  +W  H LN+       N+L+VK
Sbjct: 685 NEEKEIVTNLLLSALRALISENAE-NIWVSHWLNLMLKYVESNFLSVK 731


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 475 KLTPNYISPHLFIRAYLPKTGASIHRLIHSHTK 377
           + T  Y+S H FI+ Y P T  S+  ++ S+ K
Sbjct: 246 RATAEYLSKHKFIKKYCPNT--SVKEVVASYAK 276


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +3

Query: 168 IKNSTLSK*KKRALDTYKNRLLTKNIELEQPNKTLDEAPLEHFMFTTH 311
           +K   L+  K  A+D Y  ++    + ++   ++L E   EH+ F T+
Sbjct: 277 VKQGLLTSEKVDAIDYYSAKIENYGLRVDAARESLYENEFEHYGFITY 324


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 253 NNQIKLWTKHRLNISCLQHI 312
           ++ +KLW  H LN SCL  I
Sbjct: 100 DSTVKLWKPHVLNASCLSTI 119


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 292 ISCLQHIHNYLNVKYFDNNNLHNS 363
           ISC  ++ NY   K+F +N + N+
Sbjct: 628 ISCAGYVVNYFTAKHFGSNPIANA 651


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,570
Number of Sequences: 5004
Number of extensions: 61821
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)